Eurytemora affinis: 111708169
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Entry
111708169 CDS
T07296
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC111708169
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
eaf
Eurytemora affinis
Pathway
eaf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eaf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111708169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaf03021
]
111708169
03019 Messenger RNA biogenesis [BR:
eaf03019
]
111708169
Transcription machinery [BR:
eaf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111708169
Messenger RNA biogenesis [BR:
eaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111708169
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pfc11_Clp1_ID
VHS
Pcf11_C
zf_PCFS4
Anp1
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
111708169
NCBI-ProteinID:
XP_023337234
LinkDB
All DBs
Position
Unknown
AA seq
1543 aa
AA seq
DB search
MSSLFSNLRGEQREGAEAYYDSMKRLTSNDKNVINSLTEIAYENRSQAKIIVHVIEKRIS
MAPSDHLLPHLYLLDSICKNHGNPFTDLFQFNLINTFIHVFHKVNEKVRTAMYKLRYTWT
AANLFKPATLQELDRRIHEIDPAWPILKSYAPPQTQHGGGSHKILINPTQPNQHGGSHKI
LINPAKFPQSTGSKLRVPEPVLRIEEETEMMRTELLRKEKELLELKKKDIDQQLQGLKMQ
QQIKNNSLDGTASTPDDAKVSTKKVRLIQTDVCRRIKYIFNPQYNSCCNSSKFRLNKICV
GQLYAPLETRRNYLLYFQNIGTEVSSSSSSESRDPRKRRKPESEKHESVPSELSSSKSDT
KSTSRSESRHKDRSPNRKSARSEKSNGSSHSSTSSSKRSSKSEDKKKSSPKKEEKKEKKR
EPSPKFSRSPTPVVDGRISPLPPPPSNKIPKLRKGEEEKREEKRAEKRASEDGKRTPPPE
KRPRPINIDLVEDSSVRDTSSPVVGWAKHKESNPDKFRTPNKEMGPFFQDHGPPGPWMED
RGRGRGFRGFRGHRNNWGGGRGRFNDFPRFPHQQGFMGPMFGFQPRGGMGPPFRPGFRMP
SGLPGLHGPDITKTDPVIIRKEVIPNLMKLGQECKEKGTIDEVQFREFMNQVMQLKETSL
NREAEMRQNRDVELRQNQENKENRFQRRGVHGFPSAGDRLNGADDRVEDKKIPHVDGTHN
RPRTDIISPHKNDLPLANPTELEEIKKDPTRTLNIDDIPRAIRYYGETATIAMDDNLICE
LAFKPERESRCVLVDNIAVYCEINTDRYTKFMLNGKTHKLRIGNPTRELWIDNEWYECYF
NSKIRIKIDNNYHNIFLPGPPPSVDIGKVRHDLCRGRVYALLDGNLDSRTPLYLDSKPQL
LIIGYKPHVLRFVEGFKTLTINGHPFRTDFGGFPMVISVNGFKHYVRLTSFPTGAWDEDK
QCYRPISPRMDERLSPVGSPKDDVGLHSQDPLNQMMSVLPSSSNSKRSETPNNYGTSPGV
TGPPPNLTSTPTHPPPSPPPSXPPPSLNSTPAIVDVPARQPAVPEAIVAPPIVDAPAPDI
NDLWAKLQSSGVLSLFGTGGVGSAAGIPGLAVQQEPERPAESPISFPNAPTRKVRRNSVG
MKEIQLKSHDPSLKERHQYVIDSLFGLSDLQCKSCGLRFNSEEMGFYSSHLDWHFRLKRR
ERDNARKAQSRRWYYEKNDWIVSDEIEDDEHDMTEEDIILEQSMEIPTVAARGAGNQEGG
EETCPVCTEVFSQVYRQEGEEEGSWQLHNAMRDDLGVAYHPECYKDKEAQEKRALENPRD
STPEHDESMEVEDEVKVDLGELKMEVQEGNVEVKTEPLEQSQDEDVEMIEVKSEPGAEVK
TEVVDDLMPKPEGVEPVDSESEPMKSGEEPLESGVESAGAGAELSKTEAEAGGAETKPEK
VDLDLSMSSNLENKPPVPVSIPKPKVEIKVSLTTNIVKEDKIERSESLSEDLEDSEFDPE
AIIVPALTQEAKDLAKPKLKGRSLVNYPPNMKDKDMSGLCSIM
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgctgttctccaacctccgtggagagcagagggaaggtgcggaggcttattat
gattctatgaaaagattaacttcaaacgacaaaaatgtgataaattccttaacagaaatc
gcctatgaaaaccgttctcaggccaaaattattgtccatgtcatcgagaagagaatttct
atggctccctccgaccatctgctccctcacctgtacctcctggactccatctgtaagaac
catggaaatcctttcacggatttatttcaatttaatctaatcaacacttttatacacgtc
ttccacaaggttaatgagaaggtacgaacagcgatgtataaacttcgttatacctggacg
gccgccaatcttttcaaaccagcaactcttcaagaacttgaccgccgaattcatgaaata
gatcccgcctggccaattctgaagagctacgctcccccgcagacccaacatggcggtggt
tcgcataaaattttaattaatcccacccagcccaatcaacatggtggttcgcataaaatt
ttgatcaatccagccaaatttccacagtctactggttctaagctgcgtgtacctgagcct
gtgctgcgtattgaggaggaaactgagatgatgagaactgagttgctacggaaggagaag
gagctgcttgaactcaagaagaaggatattgatcagcagctccaggggcttaagatgcag
cagcagatcaaaaataactcgctggatggtacagccagtacgcctgatgacgccaaagta
tctactaagaaggttcgattaatccagacggacgtatgtcggcgtattaagtatattttc
aacccccaatacaactcatgttgtaatagttcaaagtttaggcttaataaaatctgtgta
ggccaactgtacgcccccctggaaaccagaagaaattatttgttatacttccagaatatt
ggaactgaggtttcaagctccagcagttcggagagcagagatccaaggaagagaaggaaa
ccagagtcggagaaacatgaatccgttccgtcggagctctccagctctaagtctgacacc
aagagcaccagtaggtctgaatcccgacacaaagatcgtagtccaaacagaaaatccgcc
agatctgaaaagagcaacggaagtagtcacagcagcaccagcagctctaaaagatcttca
aaatccgaggacaagaaaaagtccagtcctaaaaaggaggagaagaaggagaaaaaacga
gagccgagtcctaagttttccaggtctccaaccccagttgtggacggacgaatttctcct
ctccccccgcctccgtccaacaagatccctaaactccggaagggtgaagaagagaagagg
gaagagaaaagagcggaaaagcgagcatctgaggacgggaaaagaacaccgccgccggaa
aaacgtccacgaccaattaatatagatttggttgaagattcctctgtgagagatactagc
agtccagtagttggttgggctaaacataaggaatcgaaccctgacaaattccggacacca
aacaaagaaatggggccattctttcaggaccatgggcctcctggaccttggatggaggac
agaggtcgaggaagaggctttaggggcttcagaggacacagaaacaactggggtggagga
cgaggacgctttaacgatttcccccgcttcccccatcagcaaggatttatgggacccatg
tttggattccaacctcgaggtggaatgggtccacccttccgacccgggttccggatgcca
tctggtctacccggcttacatggtcctgatataaccaagactgatccggtcatcatacgg
aaggaggtgatccccaatctgatgaagcttgggcaggagtgcaaggagaagggaacgatc
gacgaggtacagttccgtgagttcatgaaccaggtgatgcaactcaaagagacgagtttg
aaccgtgaagccgagatgcggcagaaccgtgatgtcgagctgcgacagaaccaggagaac
aaagaaaataggtttcaacgtcgtggtgtgcatggattcccctcggccggagaccgtctt
aacggtgcggacgatcgggttgaagataagaaaatcccccacgtggatggaacacataac
cgtccacgcactgatatcatcagtcctcacaagaatgatctacctctggccaatcctacc
gaactggaggagatcaagaaagatccaacccgaaccctgaacatagacgacattcctcgt
gccatccgttactacggagaaacggcaaccatagcgatggatgataatctcatttgcgag
ctcgcctttaaacctgaacgggaaagtcgatgtgttctggtggataatatagcggtgtac
tgtgaaattaacaccgatcgctacactaagtttatgctgaacggtaaaacccacaagctg
aggataggaaatccaacccgtgaattatggatagataacgagtggtatgaatgttatttt
aacagcaaaatccggatcaagatagacaataattatcataatatattcttacctggaccc
ccaccttctgtggatattgggaaggttcgacatgatctgtgccgcggtcgtgtttatgct
ttgttagatggaaatctggacagtagaacccctctctatcttgattcaaagccccagctg
ctaataattggttacaagcctcatgttcttcgtttcgtggagggatttaaaactctgaca
atcaacggacatccgtttagaacggactttgggggatttcctatggtgatatccgttaac
ggttttaagcactatgttcgtttgacgtcgtttcccacaggggcctgggatgaggataaa
cagtgctatcggccgatttctccccggatggacgaacgactctctccggtcggaagtcct
aaggatgatgttggattacactcgcaggatccgctaaaccagatgatgtccgtcctaccc
tcttcttctaattccaaaagatcggaaactccaaataattacggaactagtcccggagtt
acgggccctccacccaaccttacctcaaccccaacacatcctccaccctccccgccgccc
tcttagcctccaccttccctcaactctacacccgccattgtagatgtccccgccagacag
ccggctgttcctgaggcgatagttgctccgcccatcgtagatgccccggcccctgatata
aatgatctgtgggccaaattacagagctctggggttctctctctctttggaactggtggc
gttggttcagcggcgggtatacctggactagctgtacaacaggaaccggagagacccgcc
gaatcgccgattagtttcccaaatgcgccgactcgtaaagttcgacggaactctgttgga
atgaaggaaatacaattgaaatcccacgatccttcactcaaggagcgacatcaatatgtc
attgatagtttatttggactctcagacttacagtgcaaatcatgtggattaaggtttaac
tctgaggaaatgggattttacagttcccatctggattggcacttcaggctcaagaggaga
gagagggataacgctaggaaggcgcagagcaggcgttggtattatgagaagaacgactgg
attgtctctgatgaaattgaggacgatgaacatgacatgaccgaggaggatattatcctt
gagcagagtatggagattccaacggtagctgcccggggggcggggaaccaggagggtggg
gaggaaacctgccctgtgtgtactgaggtgttcagtcaagtatatcgacaggaaggagaa
gaggagggaagctggcaactccataatgctatgcgagatgatctaggagtggcgtatcat
ccagagtgctacaaagataaggaggcacaggagaagagggctttagagaatcctcgggat
tcaactccagaacacgatgagagtatggaggtcgaagacgaggtcaaggttgaccttggg
gagttaaaaatggaggttcaggaaggaaatgttgaggttaagactgagcctctggagcag
tctcaagatgaggacgtggagatgattgaggttaaatctgaaccaggagcagaggtcaaa
acagaagtcgtagatgatcttatgcccaaacctgaaggagttgaacctgttgattccgaa
tctgaacccatgaaatccggtgaggaacctctagaatccggagttgaatctgccggagcc
ggagctgaactctctaagaccgaagctgaagctggtggtgcagagactaaacctgagaag
gttgatctggatttatccatgagctccaacctggagaataaacctcctgtacctgtttcc
atccctaaacccaaggttgaaatcaaggtgtctttgactactaacatcgttaaggaggac
aagattgaaaggtctgagtccctgtcagaggatctagaggattcagaattcgacccagag
gccattatcgtcccagctttaacacaggaggccaaagacctggccaaaccgaagttaaag
ggtcgtagcttagtgaattatcctccaaacatgaaggacaaggatatgtctggactctgt
agtatcatgtaa
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integrated database retrieval system
