Eurytemora affinis: 111710505
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Entry
111710505 CDS
T07296
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
eaf
Eurytemora affinis
Pathway
eaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111710505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaf03019
]
111710505
Enzymes [BR:
eaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111710505
Messenger RNA biogenesis [BR:
eaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111710505
mRNA degradation factors
3'-5' decay
Ski complex
111710505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
MTR4-like_stalk
DUF3516
ATPase_2
Motif
Other DBs
NCBI-GeneID:
111710505
NCBI-ProteinID:
XP_023340376
LinkDB
All DBs
Position
Unknown
AA seq
1212 aa
AA seq
DB search
METLPPLLQDLAAQLESFLLHPEVLPMHDTGPAQEFWLREPEPLNLLSCKPAPIDTRLQV
TRNPCTGEVEGFTEVYVKDAGTTAKNSTSLRRAPGPLEEVTRGSATNYPFWPGGFAAPDL
RLPDLEESIQDFSTLLSVPPGFQSGMDFSEITAPKPQPSSKLHSELSSEPIPDTLNLVTI
LNSDNDILGDWVEVDEKKGKEGKKKDDLGLDLDLDLQLSDSVVIKTDKQSTVVQKSTRWA
EMLDSEATIPDFHQLVPQMAYQWPFELDTFQKQAVLKLEQAESVFVAAHTSAGKTVVAEY
AIALSQKHMTRTIYTSPIKALSNQKFRDFKDTFNDVGLVTGDIQINPAATCLIMTTEILR
SLLYNGSDIIRDLEWVIFDEVHYINDPERGVVWEEVLILLPEHVNIIMLSATVPNTLEFA
DWVGRTKKKKIWVISTAKRPVPLEHFLYTGSSGKSRDERFLLQDAAGNFLQKGYTKAVEA
KKEREAKGKQQTGSKGVKDRVGPQQERNIWLTLIDHLQRQDKLPVVAFTLSRSRCDQNAN
ILTSLDLTTNMEKGDIHHFINKCVSRLKGPDRKLPQLSNDIKCCVGSGRVLLCTSYQMII
NVVXEVVECCFANGWVKLLFATETFAMGVNMPARTVVFDNIKKHDGKQFRVLLPAEYIQM
AGRAGRRGLDSTGTVIILCKNEVYDMNDLHGMMKGKPTRLESKFRLTYSMILNLLRVEEL
RVEDMMKRSFAELDTQKKQVAYKDRAEVLKSELETLSDISGDGFQDVKLFYALATQYLEK
RNSIWTLLLSHHTPCKALSPGRIILLNLRQNINVPGVLLAVDNKSKERQYTVLLPQPMES
VGLKCLSLDDSALSEAKDKLKTRCLSLARKSICELNMSSTEQIVLHIKDDDIVQITNKSI
KIEPDKIIADIKKREIPRFRQDPPAQSVLFAIQNIMKITDPSSGDIGFMDPIRDFKIHDL
DLLTTLKTMESLMERIEEIDSSSSDFTQLFSKVYSVMSVRDELEKCEYLCSEASLSLLPE
YHCRTHVLRTLQYLDSSNTVQLKGRVACEMGSNEIIVTELVFNNQLTERPPEEIAALLSC
LVFQQRNCSEPELTASLKKGVEDIKIIAGKIGQCQVECGILQPVGDYVDSFNFGLVEVVY
EWARGMPFADITKLTDVQEGVIVRAIQRLDESLRDVKDAARVIGDPVLYQKMDQASTIIK
RDIVFAASLYTQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggagacgctgccacccctgcttcaggacctcgcggcacagttggaatcttttctttta
catcccgaggttttaccaatgcatgacacaggaccagctcaggagttttggttgagagaa
cctgaacctttaaacctactaagctgtaaacctgccccgatagacacaagactacaggtg
acccgaaatccatgtactggtgaggttgaggggtttaccgaagtttatgttaaagatgct
ggaactaccgccaaaaattccacttctctaaggcgtgcccctgggccattggaggaggta
acgagggggtcagccaccaactaccccttctggccaggggggtttgctgcccccgacctc
cgtcttccagatctggaggaatcaattcaagatttttccactcttctctccgttcctcca
ggatttcagtctgggatggatttctccgagattacggctccaaaacctcaacccagctct
aaactccactctgagcttagctcagaacccatcccggatacattgaacctcgttacaatt
cttaattcagacaatgatattctcggagactgggtggaggtggatgagaagaagggaaag
gaaggaaagaagaaagatgatcttggacttgatcttgatttagatctccagctttcagac
tctgttgtaattaaaactgacaaacagtcgacagtagttcagaagtcgacaagatgggcc
gagatgctcgattcagaggcgacaattccagatttccatcaattggttccgcagatggcg
taccagtggcccttcgagttggatacttttcagaaacaggcggtgcttaaactagaacag
gcggagagtgtgtttgttgcggcgcatacttccgccggtaaaaccgttgtggcggagtat
gccattgcgttgagtcagaagcatatgacaaggactatttacacttctcccatcaaagct
ctatcaaatcagaagtttcgagattttaaggatacttttaacgatgttggactggtaact
ggtgatatacaaatcaaccctgccgctacttgcctcatcatgacaactgagattcttagg
tcattgttgtataacgggagcgatattattcgagatttagagtgggtcattttcgacgag
gttcactatatcaatgacccagagcgtggagtggtgtgggaagaagttctaattcttctc
cccgagcacgtgaatatcatcatgctgtctgctactgtaccaaatacattggagtttgca
gactgggtaggaaggacaaaaaagaagaaaatctgggttatttcaacagcaaaaaggcca
gtcccacttgaacacttcctgtacactggctcaagtgggaagagtcgggatgaaagattc
ctgctccaggatgctgctggcaactttttacagaagggttacacaaaggcggtagaggca
aagaaggagagagaagccaagggtaaacagcagactggtagtaaaggagtgaaggaccga
gttggtccccagcaggagcggaatatctggttaactctcatagatcatcttcagcgacaa
gacaagcttcctgtagtagcattcactctcagtaggtcaagatgtgatcagaacgcgaat
atactgacgagtctggatttaacaacaaatatggagaaaggagatatccatcattttatc
aataaatgtgtttcaagactcaaggggccggatagaaaactccctcaattatcaaatgat
attaaatgttgtgtaggaagtggtagagtgctattatgtactagttatcaaatgataata
aatgttgtgtaggaagtggtcgagtgctgtttcgcgaacggttgggtcaaacttctcttt
gcaacagaaacattcgcaatgggagtcaacatgccggctagaacggttgtgttcgacaat
atcaagaagcatgatggcaagcaatttcgagttttacttcctgccgagtacattcagatg
gcaggcagggcaggcagaagaggacttgactctacaggaactgtgataatcctgtgtaag
aacgaggtgtacgacatgaatgaccttcacgggatgatgaaaggaaaacctacgaggcta
gaaagcaagtttagactcacctactcaatgatactaaatcttctcagagttgaagagttg
agagtggaggatatgatgaagcgcagttttgctgaactggatacacagaagaaacaggtc
gcgtacaaggacagagccgaagtactgaaatctgaacttgagacattatcagatatttcc
ggagacggatttcaggacgttaaactcttttatgcgctagcaactcaatacctagagaaa
aggaatagtatttggaccctactgctctcccatcatactccttgtaaagcactttccccc
ggcagaattatcctccttaatctcaggcagaatattaatgtccctggagtactgttagct
gtagataataagtccaaggagagacagtacactgttctccttccacagcctatggagtct
gttggtttgaagtgcctaagcctagatgattctgcgctctcggaggcgaaagataaatta
aaaacaagatgtttgtctttagcaaggaagagtatttgtgaattaaacatgtcaagtaca
gagcaaatagttcttcacatcaaggacgatgatattgttcaaataacaaacaaatcaatc
aaaatagagccagacaagatcatcgcagatattaagaaaagagaaattccccggttcaga
caggatcctccggctcaaagtgttctctttgcaatccagaatattatgaagattacagat
ccctctagtggagatattgggtttatggatcccatcagagacttcaaaattcatgattta
gatctgctgactacattgaagacaatggaaagtttaatggaaagaattgaagaaattgat
tcatcttcttccgattttacccaacttttctccaaggtttacagtgtaatgtcagtacgt
gatgaactagagaagtgtgaatatctctgctctgaagctagtctatctctactacctgaa
taccattgcaggactcatgtactgcgaaccctacagtacctggactcttccaacactgtt
caactcaagggtagagtagcgtgtgagatgggaagcaatgaaattattgtaacggaactc
gtgttcaacaatcagctgactgagcgcccaccggaagaaattgccgcgttgctttcttgt
cttgtcttccagcagaggaactgctcggaaccagagctcacggccagcttgaagaaagga
gttgaggacataaagataatcgctggaaaaattgggcagtgtcaagttgaatgtggcatt
ctgcaacctgttggggactacgtagactctttcaattttggactagtggaggtggtttac
gaatgggcgcgaggaatgccgtttgcggatatcacaaagctaacggatgtacaagaagga
gtaattgtgcgagctatccaaaggttggatgaatctttgagggatgtgaaggatgctgct
cgtgttattggagaccccgttctatatcagaaaatggaccaggcatcaactatcattaaa
cgagatattgtgttcgccgcttcactctacactcaatag
DBGET
integrated database retrieval system
