Eurytemora affinis: 111717250
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Entry
111717250 CDS
T07296
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
eaf
Eurytemora affinis
Pathway
eaf03020
RNA polymerase
eaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111717250
09124 Replication and repair
03420 Nucleotide excision repair
111717250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaf03021
]
111717250
03400 DNA repair and recombination proteins [BR:
eaf03400
]
111717250
Enzymes [BR:
eaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111717250
Transcription machinery [BR:
eaf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111717250
DNA repair and recombination proteins [BR:
eaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111717250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
bPH_3
Motif
Other DBs
NCBI-GeneID:
111717250
NCBI-ProteinID:
XP_023348532
LinkDB
All DBs
Position
Unknown
AA seq
1927 aa
AA seq
DB search
MTIITSDSKAPVKTVKRVQFGILSPEEIRRMSVTEGGIRFPETYEGGQPKPGGLMDPRQG
AVDRGSRCKTCAGNMIECPGHFGHLDLAKPVFHPGFLTKTLKVLRCVCFYCSKMLVTPTN
PKIKEIVMKSKGQPRKRLTHVYDLCKGKKICEGGDEMDLNPDNPENAVNQAKNHGGCGRY
QPNIRRTGLDMTAEWKQINEDTQEKKIVLTAERVHEIFRHISDEECYVLGMDPKFARPDW
MIVTCMPVPPLCVRPAVVMFGSARNQDDITHKLADILKANNELKRNEESGAAAHILSENI
KMLQFHVATLSDNDMPGLPRAMQKSGRPLKSIKARLKSKEGRIRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNTQYPGAKYIIRDNGERI
DLRFHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
DTSPYNADFDGDEMNLHVPQSMETRAELENIHMTPRQIITPQANKPVMGIVQDTLCAVRK
MTKRDVFIDKELMMTLLMFLPNWDGKLPIPAILKPKPLWTGKQLFSLIIPGNVNCVRLHA
THPDSENGGPYHWISPGDTRVLIENGEHITGIICKKTLGTSAGSLLHICQLEVGHEENGL
FYGNIQTVINNWLLIEGHSIGIGDTIADAQTYSDILKTIETSKAEVNEVIHKAHFDELEA
TPGNTLRQTFENMVNRILNDARDKTGGSAKRSLTEFNNFKVMVVAGSKGSDINVSQVIAC
VGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMEACMVNYDGTVRNSVGQLIQLRYGEDGLAGEAVEFQSIK
TVTLSNNAFESKFKFDPTNERYVRRVFTDEVLRDMVGSGEVVAEIEREWEQLLRDRHCLR
QIFPKGNNKVVLPCNLERMIWNAQKIFHINKRAPIDLNPLKMIRGTRELLKKCIIVPGDD
RLSLQANDNATILFQCLVRSTLCTKMVAETHKLSEEAFDWLLGEIETKFAQSQVAAGEMV
GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLIGNA
ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTRI
SPWLLRIELDRKRMTDKKLTMEHISEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEEG
KEDDEDQADKMEDDMFLRCIEANMLSDMTLQGIEAVAKVYMHLPQTDDKKRILITENGEF
KAIAEWLLETDGTALMKVLAERDVDPVRTCSNDICEIFACLGIEAVRKSVEKEMALVLNF
YGLYVNYRHLSLLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMEAASHAEV
DPMRGVSENIIMGQLPRMGTACFDLLLDAEKCKMGIEIPMNVGGGMMGGGMFFGSVASPG
AAMTPGMTPWAEGATPAYGGSVWSPAGMGSGMTPGGPGFSPSAASDASGMSPAGFSPAWS
PQPGSPGSPAMSPYIPSPAHGDASPGYSPSSPTYAPISPSMPSPSSPSYSPTSPSYGHSP
TSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPSSPQYSPASPKYSPSSPKYSSTSPNYSPTSPAYSATSPNYSPTSPSYSPSSPQY
SPSSPKYSPTSPNYSPTSPSYSPTSPSYSPTSPNYSPSSPKYSPSSPKYSPSSPQYSPTS
PQYSPTSPQYSPTSPQYSPTSPSYSPTSPSYSPASPSYSPASPSYSPASPSYDSDDEKKN
VKKSKKK
NT seq
5784 nt
NT seq
+upstream
nt +downstream
nt
atgacgattatcacgagcgacagcaaggctccggtgaaaaccgtgaagcgagtacaattc
ggcattctctcgccggaggaaattcggcgaatgagtgtaacagaaggcggaataagattt
cctgaaacctatgaaggaggtcagcctaaacctggtggacttatggatcctagacaaggg
gctgtagatcgaggatcaaggtgtaagacatgtgccggaaacatgatcgagtgcccagga
catttcggtcatcttgatctagcaaaacctgttttccatcctggctttctcaccaaaacc
ctcaaggttctacggtgtgtttgcttctactgttccaagatgctggtcacacctacaaat
cctaaaataaaagaaattgtgatgaaatcaaaaggacaacctcggaaacgattaacccac
gtgtacgatctgtgcaagggtaagaagatctgcgagggaggagacgagatggatctaaac
ccagacaatcctgagaatgcggtcaaccaggctaaaaaccatggtggttgtggtcgttat
cagccgaatattcggagaactgggcttgatatgacagcggaatggaaacagattaacgag
gatacacaggagaagaagatagttctaacagctgaacgtgtacatgaaatattccgtcat
atatctgatgaagaatgttatgtactaggaatggatcccaagtttgcacgtcctgactgg
atgatagtgacttgtatgccagttccaccgttgtgtgttcggccagctgttgttatgttt
ggatcagctcgtaaccaggacgatatcacacataaacttgccgatattctaaaggccaat
aacgagctgaagcgtaacgaggaatctggcgctgcggctcacattctctctgagaatatc
aagatgcttcagtttcacgtcgcaacactttccgataatgacatgcctggcctgcctaga
gccatgcagaagtcaggcagacctctcaaatccattaaagctagactgaagagtaaagaa
ggaaggatcagaggaaacttgatgggaaaacgtgttgatttctcagctcgtactgtaatc
acccctgacccgaacctccggatcgatcaggtcggagtacccagatctatcgcacagaac
ctcacctttccggagatcgtgactccgttcaatatcgacaagatgcaggagctcgtgaga
agaggcaatacacagtatccgggagctaaatatatcatcagggataacggagaaaggatt
gatttgagattccatcctaaatccagtgatcttcatctccagtgtggatacaaggttgag
agacatatccgtgatggagatctagttgtgttcaacagacagcctactctacataaaatg
tccatgatgggccacagggtgaaggtcctaccctggtcaaccttcaggatgaacctcagt
gatacatctccgtacaatgctgattttgatggagacgagatgaatcttcacgttcctcag
tccatggagaccagggcagagttggagaatattcatatgactccacgtcaaatcatcact
ccgcaggcaaacaaacccgttatgggtattgtccaggatacactctgcgctgtgaggaag
atgacgaagagagatgtgtttattgataaagaattgatgatgacgctgcttatgtttctg
ccgaactgggacggaaagcttcctattcccgccattttgaagcctaaaccactgtggact
ggaaaacagctgttttctctgattataccaggaaacgtgaactgtgtgcgtctccatgct
acccatcctgactccgagaacggaggaccgtaccattggatatctccgggggataccagg
gttctcattgagaacggagaacacatcactggaattatttgtaagaaaacacttggtaca
tctgcaggttcccttcttcatatctgccaacttgaggtcggacatgaggaaaatggatta
ttctacggaaacattcagaccgtgatcaacaactggcttctcattgaaggccacagtatt
ggtatcggagatactattgctgatgctcaaacctactcagatatcctcaaaactatcgaa
acctccaaggccgaggtcaatgaagttattcataaagcacattttgacgagctcgaggca
acccctggtaacacgctgaggcagacattcgagaacatggtgaacaggatcctcaacgac
gcgagagacaagaccggaggatctgcgaagagatcactcactgagtttaataacttcaag
gttatggtggtggcaggttccaagggatctgatattaatgtatctcaggttattgcttgt
gtggggcagcagaacgttgagggcaaacgaatcccttttggatttagaaaacgtacactt
cctcattttatcaaggacgactacggtccagagtcccgagggtttgtagagaattcctac
ttggctgggttgaccccaagcgagttctacttccacgctatgggaggaagagaaggttta
attgatactgctgtcaaaactgcagaaactggatatattcagcgtaggctcatcaaggct
atggaggcctgtatggtgaactacgacggtacagttcgtaactctgtgggtcagctcatt
cagctgagatacggagaggatggtcttgcaggagaagctgtagagtttcagtcgattaaa
actgtcactctgtcgaacaatgcgtttgagagtaaattcaagtttgatccaaccaatgaa
aggtatgtgcgtcgtgtgtttaccgacgaggtactccgtgatatggttgggagtggtgag
gtggtggcagagatagaacgagagtgggaacagttactcagagacaggcattgtcttaga
cagatatttcctaaaggaaacaacaaggttgtactgccttgtaatctggagagaatgatc
tggaatgcgcagaagatttttcatatcaacaaacgtgctccgatcgaccttaatccgttg
aaaatgatcagaggaacacgtgagctgctgaagaaatgtattattgtgcccggagatgac
agactgagtctccaggccaacgataacgctacaatcctcttccaatgtcttgtcaggtcc
actctttgcacaaagatggttgcggaaacacacaaactttctgaggaagcatttgactgg
cttctcggtgagatagagactaagtttgctcagtcccaggtagcagctggtgagatggtc
ggcgcgctagcagcgcagagcttgggagaacctgccactcagatgactctgaatactttc
cattttgctggagtatcctctaagaacgtaaccctgggagtgcccaggttgaaggagatt
atcaatatctctaagaagccgaaggcgccctctctaactgtattcctgatcggtaacgca
gccagggacgctgagaaggctaagaatgttctctgcagactagaacacactactcttaga
aaggtaaccgcaaacactgctatctactacgaccctgatccccagaacactgtgattgcc
gaggatcaggagtttgtcaatgtgtactacgagatgcctgactttgatccaacccgtata
tccccctggttgctgaggatagagctggacaggaagaggatgacggataagaagctcact
atggagcatatttcagagaagattaatgcaggtttcggcgacgatttgaactgtatcttc
aacgacgataacgccgaaaaattggttctccggatcagaattatgaacagtgaggagggt
aaggaagatgatgaagatcaggcggataagatggaagacgacatgttcctcaggtgtatt
gaggcgaatatgttgagtgacatgaccctgcagggaattgaagctgtagcaaaggtttac
atgcatctgccccagacagatgataagaagaggatccttatcacagagaatggagagttt
aaagctattgctgaatggttgcttgagactgatggtactgcactaatgaaggttctagct
gagagagatgtagaccccgtgagaacctgttccaacgatatttgcgagatattcgcttgt
ctcgggattgaagctgtcaggaagagtgtagaaaaggaaatggcgttggtattgaacttc
tacggtctatacgtgaactaccgtcatctcagtttactatgtgatgtcatgacagctaag
ggtcatctcatggcaatcactcgtcacggaatcaataggcaagacacgggtgcgttgatg
agatgttccttcgaggagactgttgacgttcttatggaggccgcatctcacgctgaggtc
gatcctatgcgtggagtatcggagaatattattatgggtcagcttcctaggatgggaaca
gcatgcttcgaccttctgctagacgctgagaagtgtaagatgggaatagaaattcccatg
aacgtcggcggaggaatgatgggcggaggcatgttcttcggttcggtcgcttcaccaggc
gccgcgatgacaccgggaatgacgccatgggcggaaggagcaactccagcctacggaggc
agcgtatggagtccagcgggaatgggaagtggtatgacacctggcggacctgggttttct
ccgagtgccgcgagcgatgcgagtgggatgtctcctgcaggattctccccggcttggtct
ccacaacctggttctcctggtagtccagcaatgtcaccgtacataccctcaccagctcat
ggtgacgcatctcctggttattctcctagctctccaacctatgctccgatatcccctagt
atgccatcccccagttctccgagctattcaccaacaagtccttcatatgggcattcaccc
acctcaccccagtattcaccaaccagcccgagctattcaccaaccagtcccagctactca
ccgacctcaccatcctattctcccaccagtccttcctactctccaacctccccgagctat
tcaccaaccagcccttcctattcaccgacaagccctagctattcaccaacatctcccagt
tactcaccaacatcaccaagctactccccaacctctcccagctattcacctacgtctcca
agctattctccaacaagtcctagctattcaccaaccagtcccagctattctccgacatct
ccttcctactcccctacctctccttcctactcccccactagcccatcctattctcctact
tctccttcctactccccatcctctcctcagtactccccggcctctccgaaatattcgccc
tcctctccaaaatactcctctacatctcccaactactccccgacctcccctgcctactct
gccacttctcccaactattccccaacctcaccttcctactccccatcctctcctcaatac
tccccttcttctcccaaatattctcccacatctcccaactactccccaaccagcccatcc
tactcccctacatccccttcatactccccaacctctcccaactattctcctagcagtcct
aagtactccccaagctcacccaagtactcccccagctctcctcaatactccccaacctct
ccacagtactcccccacatctccacagtactccccaacctctcctcaatactccccgacc
tccccctcctactccccaacctctccatcctattccccagcttccccctcctactccccc
gcctctccctcctactctcctgcctccccctcctatgattctgatgatgagaagaaaaac
gtcaagaagtctaagaagaaataa
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integrated database retrieval system
