Candidatus Ecksteinia adelgidicola: F7X37_00003
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Entry
F7X37_00003 CDS
T08924
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
eag
Candidatus Ecksteinia adelgidicola
Brite
KEGG Orthology (KO) [BR:
eag00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F7X37_00003 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eag03021
]
F7X37_00003 (rpoD)
Transcription machinery [BR:
eag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F7X37_00003 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Imm3
WH_Rok
Motif
Other DBs
NCBI-ProteinID:
UDG79075
LinkDB
All DBs
Position
2925..4742
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AA seq
605 aa
AA seq
DB search
MDQNSQLQLKLLITRGKEQGYLTYAEVNDYLPDDIVDSDQIEDIIQMINDMGIQVTEETP
NSDDLILTESSTDTDEDAVEAAAQVLSSVESEIARTTDPIRMYMREMGTVELLTRKGEID
IAKRIEEGINQVQSSVAEYPEAITYLLEQYDRIETGEARLSDLITGFTNSSEESHLNATS
INIDDELERESQNSNDEDQDDNNIDPQLARQKFVDLNNQYQITRLIIKKNGRDHLSTASE
ILKLSEIFKQFRLVPKQFDFLVNNMRTMMERIHTKERMIVKLCVEECKIPKKNFVILFSK
NETSNVWLENIISMLPSWPDKFKIILKNLKHCLKKLQKIEAETGLTIKEIKDIYRRISIG
ETKARRAKKEMVEANLRLVISIAKKYTHRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPAPEELAERML
IPEDKIRKVLKIAKEPISMETPIGDDDNSHLGDFIEDTTLELPLDSATSESLRSATHDVL
AGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILR
SFLDE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaactcgcagttacagttaaagttgcttattacccgtggtaaagagcaaggc
tatttgacctatgctgaagtcaatgactatcttccagatgatatcgttgattccgatcaa
attgaagacattattcagatgattaacgatatgggtattcaagtcacagaagagactccg
aattctgatgatttaatactaactgaaagttctactgatactgatgaagatgcggtagaa
gctgctgctcaagttttatctagtgttgaatctgaaatagctagaactactgatcctata
cgtatgtacatgcgcgaaatgggtacagtcgagttgctaactcgtaaaggtgaaatcgat
attgctaaacgcattgaagaaggtattaatcaggtacaatcttctgttgcggaatatcca
gaagctattacatatctcttagaacaatatgatcgtattgaaacaggcgaagcacgttta
tctgatttaattactggctttacaaattcaagcgaagaaagtcatttaaatgctacttct
ataaatattgacgatgaacttgaaagagaaagtcaaaattctaacgatgaagatcaagat
gataataacattgatcctcaattagcacgacaaaaatttgttgatttaaataatcaatat
caaattactcgcttaattattaaaaaaaatggtcgagatcatttaagtacagcatcagaa
atcttaaaattatctgagatatttaaacaatttcgattagtaccaaaacaatttgatttt
ttagttaataatatgcgtactatgatggaacgtattcatactaaagaacgtatgattgtg
aagttatgtgttgaagaatgcaaaataccaaaaaaaaattttgtaattttgttttctaaa
aatgaaactagcaatgtttggctagagaatatcatatcaatgcttccttcttggcctgat
aaatttaaaattattttaaaaaatttaaaacattgtttaaaaaaactgcagaaaatcgaa
gcagaaactggccttacgattaaagaaataaaagatatttatcgtcgaatatcaattggt
gagacaaaagctcgacgtgcaaaaaaagaaatggttgaagctaatctacgattagttatt
tctattgctaaaaaatatactcatagaggtttacaatttttagatcttattcaagaaggt
aatattggattaatgaaagcagtagataaatttgaatatcgtcgtggttataaattttca
acttatgctacttggtggatacgtcaagctattactcgctctattgctgatcaagcgcgt
actatccgaattcctgttcatatgattgaaacaattaataaacttaatcgtatatcacga
caaatgttacaagaaatgggtcgtgagccagcaccagaagaattagctgaacgtatgctt
ataccagaggataaaattcggaaagttttaaaaattgcaaaagaacctatttctatggaa
acaccaattggtgatgacgataattcgcatcttggtgattttatagaagatactacgcta
gaacttccgttagattctgctacttcagaaagtttacgttctgctacacatgatgtgcta
gctggtttaactccgcgtgaagcaaaagtattacgtatgagatttggtattgatatgaat
actgatcataccttagaggaagtaggtaaacaatttgacgttactcgtgagcgtattcga
caaattgaagcaaaagcacttcgaaaattgcgtcatcccagtagatctgaaatattaaga
agttttcttgatgaataa
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