Candidatus Ecksteinia adelgidicola: F7X37_00158
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Entry
F7X37_00158 CDS
T08924
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eag
Candidatus Ecksteinia adelgidicola
Pathway
eag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7X37_00158 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eag03019
]
F7X37_00158 (deaD)
03009 Ribosome biogenesis [BR:
eag03009
]
F7X37_00158 (deaD)
Enzymes [BR:
eag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F7X37_00158 (deaD)
Messenger RNA biogenesis [BR:
eag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F7X37_00158 (deaD)
Ribosome biogenesis [BR:
eag03009
]
Prokaryotic type
rRNA helicases
F7X37_00158 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UDG79208
LinkDB
All DBs
Position
complement(315728..317575)
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AA seq
615 aa
AA seq
DB search
MTNELETSFSDLGLSIPIISALIDLGYEKPSPIQVKCIPYLLNGRDVLGMAQTGSGKTAA
FSLPLLHNLKIKLKTPQLLILEPTRELAIQVAEAIINFSKHMHGVNVIALYGGQRYDLQL
RALRQGPQIVVGTPGRMLDHLKRCTLNLSQINGVVLDEADEMLRMGFIEDVETIMSKMPE
QHQTALFSATMPEAIRQITRRFMKNPQEIHIQSNLTTRPDIKQSYWTVHGIRKNEALVRF
LEAEDFDAVIIFVRTKNATLEVASTLEKNGYNSAALNGDMNQSLREQTLERLKNGRLNIL
IATDVAARGLDVDRISLVINYDIPMDSESYVHRIGRTGRAGRTGRALLFVENRERRLLRN
IERTMKLTILEVPLPNSELLSKRRLDKFSIKIHQQLKKNDLDLYRALLPKLQPKQELDIV
TLAAILLKIAQEKCPLILPPDPIFKPRQRREFNNYTKSIRSIHSEINSSYRKQHHTYARQ
LYRINIGRDDGIEVRHIVGAIANESNVNSRYIGNVKIFSSYSTIELPKNLSSDTLNQFNK
IRILNKQINIQFLRSIQSNLNHSNNRLLPNERYKNKACHLSNNDRYNNNVTRHKKLTTRH
NNSSSTVSRCKFNNT
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgactaatgaacttgaaacctctttttctgatttagggttatctattccaattatttct
gctttgattgatctaggttatgaaaaaccatcaccaatccaagttaaatgtattccttat
ttgctcaacggccgagatgtattaggcatggcacaaactggaagtggaaaaactgcagca
ttttctttgccattactacataacttaaaaattaaactaaaaacacctcaacttttaatt
cttgaacctactcgagaattagcaattcaagttgctgaagctattataaatttctctaaa
catatgcatggtgtaaatgttatagctttatatggtggtcagcgatatgatcttcagtta
cgtgctttacgtcaaggacctcaaattgtagttggtacaccaggtcgtatgttagatcat
ttgaaacgttgcacattaaatctctctcaaataaacggagtagtattagatgaagctgat
gaaatgcttcgtatgggatttattgaagatgtagaaactattatgagtaaaatgccagaa
caacaccaaactgcattattttcagctactatgccagaagcaattcgtcaaattactcga
cgatttatgaaaaatcctcaagaaatacatattcagtctaatcttactactcgccctgat
attaaacaaagttattggacggtacatggaattagaaaaaatgaagcactagttcgtttc
ttagaggcagaagattttgatgcagtaattatttttgttcgtactaaaaatgctacatta
gaagtagcatcaacgttagagaaaaatggttataatagtgctgcgctgaatggagatatg
aatcaaagtttgcgtgaacaaacattagaacgattaaaaaacggtcgtttaaatatttta
attgctactgacgttgctgcacgtggtctagacgttgatcggattagtttagttataaat
tatgatattcctatggattcagaatcttatgttcatcgtattggtcgaactggtcgggca
ggtcgtacaggtcgtgcattattatttgtagaaaatcgtgaacgtcgtttgcttcgtaat
atagaacgtactatgaaattaactattttagaagtacctcttcctaattcagaactattg
agtaaacggcgtcttgataaattttcgattaaaatacatcaacaattaaaaaaaaatgat
ctcgatttatatcgagcattattacctaaattacaaccaaaacaagagttagatatagtt
actttagccgctattttattaaaaatagctcaagaaaaatgtccattaattttaccacca
gatccaatatttaaaccccgtcaacgacgtgaatttaataattacactaaaagtatacga
tcaattcattctgaaataaattcatcttatcgtaaacaacatcatacttatgcaagacaa
ttataccgtattaatataggtcgtgatgatggtatagaagttcgtcatatagttggcgca
attgctaatgaaagtaatgtaaatagtcgatatattggtaacgttaagatatttagttct
tattctacaatagagcttccaaaaaatttatcttctgatactttaaatcaatttaacaaa
attcgtatcttaaataaacaaataaatatacaatttttacgttctatacaatcaaattta
aatcatagtaataatcgcttacttccaaatgaacgctataaaaataaagcatgtcattta
agtaataacgatcgatacaataataatgttactcgtcataaaaaattgacaacgcgtcat
aataactcttcgagcacagtctctcgttgtaaatttaataatacataa
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