Candidatus Ecksteinia adelgidicola: F7X37_00238
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Entry
F7X37_00238 CDS
T08924
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
eag
Candidatus Ecksteinia adelgidicola
Pathway
eag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7X37_00238 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eag03021
]
F7X37_00238 (rho)
03019 Messenger RNA biogenesis [BR:
eag03019
]
F7X37_00238 (rho)
Transcription machinery [BR:
eag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
F7X37_00238 (rho)
Messenger RNA biogenesis [BR:
eag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F7X37_00238 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
UDG79265
LinkDB
All DBs
Position
complement(460998..462257)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTTLKNTPVSDLITLGENIGLENLARVRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNKVN
YDRPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHSDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKILTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTFSDELQKMWILRKIIHPMSEINAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccacattaaaaaatacaccagtttctgatttaattactcttggagaaaat
ataggattagaaaatcttgcacgtgttcgaaaacaagatattattttctctatcttaaaa
caacatgcaaaaagtggagaagacatcttcggcgatggtgtattagaaatcttacaagat
ggatttggttttcttcgttctagtgatagctcttaccttgctggacctgatgatatttat
gtatctcctagtcaaattcgtcgttttaatttacgtaccggcgatactatttctggtaaa
attagaccaccaaaagaaggagaacgttattttgctttattaaaagttaacaaagttaat
tatgatagaccagaaaacgcacgaaataaaatactttttgagaatttaactccacttcat
gctaactctcgacttcgtatggaacgaggtaatggatccactgaagatttaacagcacgc
gttttagatttggcttcacctattggacggggacaacgtggtttaattgttgcaccacca
aaagctggtaaaactatgctattgcagaatattgcacaaagtattgcttataatcattca
gattgcgttcttatggtgttattaattgatgagcgtcccgaagaagttactgaaatgcaa
cgacttgtaaaaggagaagtaattgcctctacttttgacgaacctgcatctagacatgtg
caagtggcagaaatggttattgaaaaagctaagcgtttagtagaacataaaaaagatgtt
attatcttacttgattctatcactcgtttagctcgcgcttataatacagtagtaccagcg
tcaggaaaaattttaactggtggagtagatgctaatgctcttcatcgaccaaagcgattt
tttggtgcagcacgaaacgttgaagaaggtggaagtttaactattattgctactgcgctt
attgatactggatcaaaaatggatgaagttatttatgaagagtttaaaggtactggtaac
atggaattacatttagcacgtaaaattgctgaaaaacgtgtatttccagcaatagattat
aatcgatctggtacacgtaaagaagaattgttgacattttctgatgaattacaaaaaatg
tggatattacgaaaaattattcatccaatgagtgaaattaatgcaatggaatttttaatt
aataaattagcaatgacaaaaactaatgatgaattttttgatatgatgaaacgatcataa
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