Ensifer adhaerens Casida A: FA04_05335
Help
Entry
FA04_05335 CDS
T04507
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eah
Ensifer adhaerens Casida A
Pathway
eah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FA04_05335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eah03019
]
FA04_05335
03009 Ribosome biogenesis [BR:
eah03009
]
FA04_05335
Enzymes [BR:
eah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FA04_05335
Messenger RNA biogenesis [BR:
eah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FA04_05335
Ribosome biogenesis [BR:
eah03009
]
Prokaryotic type
rRNA processing factors
FA04_05335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
CHP02642
Motif
Other DBs
NCBI-ProteinID:
ANK72101
UniProt:
A0ABY8HJX0
LinkDB
All DBs
Position
complement(1127199..1130003)
Genome browser
AA seq
934 aa
AA seq
DB search
MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDIEHVETAPAPASELSVPV
DLEVVAETEAEPVAAVADAAPVVEEEAPAEKPKAKPKRTRKTKAKAAEEAAAASTDGDES
NGGEMAAMVDTDAISEDVDSRRRHDDDDDDDDSHDGEKEIIESVGAEDAMEEVPDRQVRK
PRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKI
TNLQDRKRLKEIARGLEVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNST
APCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVH
PIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTN
LEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKRLKDCLKNDRARIQVGRISHFG
LLEMSRQRIRASVLESTMQTCPHCNGTGHVRSQSSVALHVLRGIEEHLLKNTTHDITVRT
IPDIALYLLNQKRGTIMDYEARFGVSIIIEADAHVGAQHFAIDRGEPVENPVKIEQLLHF
EPEEEEDDVVIEEDLDEEEAEEIAGEQRQEQPKAAAQSDDQNGRKRKRRRRRRGKGGQQA
EGSALQVSESAGDADDGSDEDEGDDEGVDADAATADGDQKRKRRRRGKRGGRRNRPEGEG
EGEGQLEAGADAEAGDDGAEEAETVEAPAAAAEVEVAVAVEETAVVAEEAEVADVKPAKP
KRTRKKAVKAEEPAVSVDEVAQAAIEDQPAVADPAVEAVEEAAADLAETKPVRANRDLSK
IASEPVVTSSATKPEEEEPGKPKKGGWWQRRGFF
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaaatgcttatcgatgcgtctcattcagaagagacgcgcgtcgttgtcgtt
cgcgggaaccgcatagaagagttcgacttcgagtcggaacataagaagcagatccgcggc
aatatctatctggcgaaggtcacccgggtggagccctcgctccaggccgccttcgtcgac
tacggcggcaaccgccacggattcctggctttcgccgaaatccatcccgactactaccag
atcccgctcgccgatcgtcaggcgctcttgaaggccgaagccgaagaagcgcggcgtgac
gacgacatcgagcatgtcgagaccgcccctgccccggcaagcgaactttccgttcccgta
gacctcgaagtcgtcgcggaaactgaagccgagccggtcgcagccgtcgctgacgccgca
ccggtcgtcgaagaggaagcgccggccgaaaagccgaaggcgaagccgaagcgcacccgc
aagaccaaggccaaggccgctgaagaagcggctgctgcatcgaccgacggcgacgagagc
aatggcggcgaaatggctgccatggtcgataccgacgccatttccgaggatgtcgacagc
cgccgtcgccatgacgatgacgatgatgacgacgacagtcacgacggcgaaaaggaaatc
atcgaatccgtcggcgccgaagacgccatggaagaagttccggatcgccaggttcgcaag
ccgcgcaagcagtaccgcatccaggaagtcatcaagcgccgccagatcctgctggttcag
gtcgccaaggaagagcgcggcaacaagggcgcggcactgacgacctacctgtcgctcgcc
ggtcgctactcggtgcttatgccgaacaccgcacgtggcggcggcatctcccgcaagatc
accaatctgcaggaccgcaagcgcctgaaggaaatcgcccgcggcctcgaagtgccgcag
ggcatgggcgtgatcctgcgcaccgccggtgccaaccgcaccaaggtcgagatcaagcgc
gacttcgagtatctgatgcgcctgtgggaaaacgtccgcacgctgacgctgaattccacg
gccccctgcctcgtctatgaagaaggcagcctgatcaagcgctcgatccgcgacctctac
aacaaggacatcagcgagatcatcgtttccggtgaggaaggctacaaggaagccaagggc
ttcatgaagatgctgatgcccagccacgccaaggtggttcagccttaccgtgacgtgcat
ccgatcttctcgcgctccggcatcgaagcgcagctcgaccgcatgctgcagccgcaggta
acgctgaagtccggtggctacatcatcatcaaccagaccgaagccctggtttcgatcgac
gtcaactccggccgttcgacgcgcgagcactcgatcgaagacaccgctctccagacgaac
ctggaagcggcggaagaagtggcacgccagctccgcctgcgcgaccttgccggcctcgtc
gtcatcgacttcatcgacatggaagaaaagcggaacaaccgctcggtcgagaagcgtctg
aaggattgcctgaagaacgatcgcgcccgcatccaggtcggccgcatctcgcatttcggc
ctgctcgaaatgtcgcgccaacgcattcgcgcctcggtgctcgaatcgacgatgcagacc
tgcccgcactgcaacggaacgggtcacgtccgctcgcagtcttcggttgcactgcacgtc
ttgcgcggcatcgaggaacacctgctgaagaacacgacgcacgacatcaccgtgcgcacc
atcccggatatcgcgctctacctgctcaatcagaagcgcggcacgatcatggactacgaa
gcccgcttcggcgtttcgatcatcatcgaggctgatgcccatgtcggcgcacagcacttc
gcgatcgatcgtggcgagccggtcgaaaacccggtcaagatcgaacaactgctgcacttc
gagccggaagaggaagaagacgacgtcgtgatcgaagaggatctcgacgaggaagaagca
gaagaaattgccggcgaacagcggcaggaacagccgaaggctgctgctcagtccgacgat
cagaacggacgcaagcgcaagcgccgtcgccgccggcgcggcaagggcggccagcaggcc
gaaggcagcgctctccaggtctccgaatcggcaggcgatgccgacgacggttccgatgag
gacgaaggcgatgacgagggcgtcgatgcagacgccgcgaccgccgatggcgatcagaag
cgcaagcgccgccgccgcggcaagcgtggcggccgccgcaaccgtccggaaggcgaaggt
gaaggcgaaggccagcttgaagccggtgccgatgcggaagccggcgacgacggcgcagaa
gaagccgaaaccgtagaggcacctgccgctgcggccgaggtcgaagtggctgtcgctgtt
gaggaaacggctgtggttgccgaagaagccgaggtggcggacgtaaagcctgccaagccg
aagcgcacccgcaagaaggccgtcaaggctgaagaaccggcagtaagcgtcgacgaagtt
gcccaggcagccatcgaagaccagcctgcggttgccgacccggccgtcgaagcggtggaa
gaggctgcggccgaccttgccgaaaccaagcctgtgcgtgcgaaccgcgacctctcgaaa
atcgcttccgaaccggtggtgacgtcgagcgcgacgaagcccgaagaggaagagccgggc
aagcccaaaaagggcggctggtggcagcgccgcggcttcttctaa
DBGET
integrated database retrieval system
