Ensifer adhaerens Casida A: FA04_06870
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Entry
FA04_06870 CDS
T04507
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eah
Ensifer adhaerens Casida A
Pathway
eah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FA04_06870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eah03400
]
FA04_06870
Enzymes [BR:
eah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FA04_06870
DNA repair and recombination proteins [BR:
eah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FA04_06870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
UB2H
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANK74750
LinkDB
All DBs
Position
1433837..1437340
Genome browser
AA seq
1167 aa
AA seq
DB search
MLAGLDPKKIVEAQREITIGPVPSGAEALILAELARAGQPVAYILSDGQRIADLEQVLSF
VAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHKKKPHAAIVLVTVNAALQK
ISPQDVIQSLAFSARPGNQVRMDDIAMRLERNGFERVATVREVGEYAVRGGILDVFVPGS
GEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKHYLSLFG
ATTRDDALYQAVSEGRRYAGMEHWLPLFYDGLETVFDYLDGFRIVTDHLAREAAAERSKL
ILDYYDARLASASPGKAQATQGTPYKPVPPELLYLSSQGFNAGLSSRDAIRLSPFNEHEG
EARQVISVDARQGMRWAKSAGEGEAQDERVNVFDQAVKYIAERRSKGAKVVISGWSEGSL
DRLLQVLAEHGLGNVKPIKALAEIKSLKPGEAASAVLSIEAGFETGDLVIIGEQDILGDR
MVRRSKRRKRGADFIAEVAGLDEGSYVVHAEHGIGRFVGLRTIEAVGAPHDCLELVYADD
AKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHT
RRAPVLAAQDGVYDEFAARFPYDETEDQLNSIEAVREDLGSGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPIRIQQASRLVGSKELALTKK
EVADGKTDVVVGTHALLGTSVNFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCP
RLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYDGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGMAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGW
SPQISVGTPVMIPEHYVPDLHLRLGLYRRLGELTDLKEIDGFGAEMIDRFGPLPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTLSKIRPDQSIF
FQRELATPEKRLSGAAMVMTQLAGLAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgctggctggccttgatccgaagaagattgtcgaagcacagcgagagatcacgatcggg
ccggtgccctccggggccgaggcgctgatccttgctgagctcgcccgcgccggccagccg
gtcgcctacattctatcggacggccagcggatcgccgatcttgagcaggtcctctcattc
gtcgcgcccgacattccggtgctgacgcttcccggctgggactgccttccctatgaccgc
gtctcgccgagcgccgacacgtcggcacggcggctggcggcgctgagcgccttgattgcg
cacaagaagaagccgcatgcggcgatcgtgctggtgacggtcaacgccgccctccagaag
atctcgccgcaggacgtgatccagagcctggcgttttcggcccgtccgggcaatcaggtg
cgtatggacgacatcgcgatgcggctggagcgcaacggcttcgagcgtgtcgcgaccgtg
cgtgaggttggcgaatacgcagtgcgcggcggcatcctcgatgtcttcgtgccggggagc
ggcgagccgctgcgccttgatttcttcggcgatacgctcgaaacaatccgctcgttcgat
cctgcaagtcagcgcacgaccggtcaggtccgctccctcgatctcaatccgatgagcgag
gtgtcgctgacgcccgaaacgattagccacttccgcaagcactacctgtcgctgttcggc
gcgacgacccgcgacgacgcgctttaccaggctgtctccgaaggccggcgctatgccggc
atggagcattggctgccgctgttctatgacgggctggagacagtcttcgactatctcgac
ggcttccgtatcgtcaccgatcatctggcgcgcgaagctgcggctgagcgctcgaagctc
attctcgactattacgacgcccgtttggcctcggcgtctccgggcaaggcgcaggccacc
cagggtacgccctacaagccggttccgccggagctgctctatctgagctcgcagggcttc
aacgctggcctgagttcacgcgacgccattcgcctgtcgcccttcaacgagcacgagggc
gaggcccgccaggtcatctcggtcgatgcgcgccagggcatgcgttgggcgaagtcggcg
ggtgagggcgaagcccaagacgaacgcgtcaacgtcttcgatcaggcggtcaagtacatc
gccgagcggcgctcgaagggcgccaaggtggtgatttcaggctggagcgaaggatcgctc
gatcgcctgctccaggttctcgccgaacacggtctcggcaacgtcaagcccatcaaggca
ctcgccgagatcaagtcgctgaagccgggcgaggcggcctcggccgtgctcagcatcgaa
gccggtttcgagacgggcgatctcgtcatcatcggcgaacaggatattctgggcgaccgc
atggtccgccgctcgaagcggcgcaagcgcggtgccgacttcatcgccgaggtggctggt
ctcgacgagggcagctatgtcgtgcacgccgaacacggcatcggccgtttcgtcggcctg
cgcaccatcgaggcggtcggcgccccgcatgattgcctcgagctcgtctatgccgacgat
gccaagcttttcctgccggtcgaaaacatcgagcttctgtcgcgctacggttcagaaggc
accgatgcgatcctcgacaagctcggcggcgtcgcctggcaggcgcgcaaggccaagctc
aagaagcggctgctcgatatggcgggcggcctcattcgcatcgccgccgaacgccatacg
cgccgggcgccggtgctcgccgcacaggacggcgtctatgatgagtttgccgcccgcttc
ccctatgacgagaccgaagaccagctgaactcgatcgaggcggtgcgggaagatctcggc
agcggccgtccgatggaccgcctcgtctgcggcgacgtcggcttcggcaagacggaagtg
gcgcttcgtgccgccttcatcgctgccatgaacggcgtacaggtcgcggtcgtcgtgccg
acgacgctgcttgcccgccagcacttcaagaccttttccgaacggttccgtgggctgccg
atccgcatccagcaggcgtcgcgcctcgtcggttccaaggaactggcgctgacgaagaag
gaagtggccgatggcaagaccgatgtcgtcgtcggtacgcatgcgctgctcggcacgtcg
gtcaactttgccaatctcggcctcttgatcatcgacgaagagcagcacttcggcgtcaag
cacaaggagcggctgaaggagctgaagtccgacgtgcacgtgttgacgctttcggcgacg
ccgatcccgcgcacgctgcagcttgccctgaccggggtgcgtgaactgtcgctgatcacg
acgccgccggtcgaccgcatggcggtgcgcaccttcatctcgcccttcgatgcgctggtg
atccgggaaacgctgatgcgcgagcactaccgcggcggccagagcttctatgtctgcccg
cgtctgagcgacttgtcggagatccatgatttcctgaaatcggacgttccggagctgaag
gtagccgtcgcccacggccagatgccggcaaccgagctcgaagacatcatgaacgccttc
tatgacggccgttacgatgtactgctgtcgacgacgatcgtcgaatccggtctcgacgta
ccgacggccaacacgctgatcgtgcaccgcgccgacatgttcggtctcgcccagctctac
cagcttcgcggccgcgtcggccgctcgaaggtgcgcgcctttgcgctgttcacgctgccg
gtcaacaagacgctgacgggcatggccgaacgccggctgaaggtgctgcagtcgctcgac
acgctcggcgccggtttccagctcgcaagtcacgacctcgatatccgcggcgctggcaac
ctgctcggcgaagagcagtcgggccatatcaaggaggttggcttcgagctttaccagcag
atgctcgaggaagcggtcgccgaactcaagggtgaggaagaaatccacgacaccggctgg
tcgccgcagatttcggtcggaacgcccgtcatgatcccggaacactacgttccggatctg
catctgaggctcggcctttatcgtcgtctcggcgaactgacggacttgaaggagatcgac
ggcttcggcgccgagatgatcgaccgcttcggtccgctgccgatcgaggtccagcatctc
ttgaagatcgtctacatcaagtcgctctgccgcacggcgaatgtcgagaagctcgatgcc
gggccgaagggcgtcgtcgtgcagttccgcaacaaggaattcccgaaccctgcggcactg
gtgggttacatcgccaagcaaggcacgctttcgaagatccggcccgaccagagcatcttc
ttccagcgcgaactggcgacgccggaaaagcgcctgtccggtgcagcaatggtgatgacg
cagctcgccggcctggcgaagtaa
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