Equus asinus (ass): 106824946
Help
Entry
106824946 CDS
T04645
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
eai
Equus asinus (ass)
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eai03021
]
106824946 (SCAF8)
03041 Spliceosome [BR:
eai03041
]
106824946 (SCAF8)
Transcription machinery [BR:
eai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106824946 (SCAF8)
Spliceosome [BR:
eai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
106824946 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106824946
NCBI-ProteinID:
XP_044617721
LinkDB
All DBs
Position
28:13803624..13881794
Genome browser
AA seq
1289 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLNPLDQGVSFNKKLMDRFDFGEDSEHSEEP
KKEIPASQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQEGVEEEIFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPTIPPVVPTSLVQPPLSMTPEAVKDVGFGSLVLPGGSVASSLATSTLPAGNVFNP
PTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSSPAILGGQPPNVTSNSGILGVQRPN
VSSNSEILGVRPSVSSTSGIIGAQPPNILNNSGILGIQPPSVSSSSGLLGVLPPNIPNNS
GLIGVQPPNVPNISGPLGTQPPAGPQNLPPLNLSTQRMPAMPMLDIRPGLIPQTPGPRFP
LIQPGIPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPERPFLVPGRQSVDNVTNPEKR
IPLGNDNIQQEGDRDYRFPPIETRESISRPPPVDVRDVVVRPVDPREGPGRPPLDGRDHF
GRPPVDMRENLVRPGIDHLGRRDHFGFNPEKPWGHRDFDEREHRVLPVYGGPKGLHEERG
RFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRD
RIPNWVPPPHARVFDFFEGATSQRKGDNVPQVNGENTERHAQPPPLPGQSDPELYEKLTS
SSEISKEKSDTVADIESEPVVESTETEGT
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaaaccttcaacagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctaaatgactacaaacca
cccatttctaaagcaaaaatgacccaaattactaaggcagccatcaaagctattaagttc
tataaacatgtggtacagagtgttgagaaattcattcagaaatgtaaaccagaatacaag
gtacctggactttatgttattgactccattgtacgacaatctcgacatcagtttggtcaa
gaaaaggatgtgtttgcgcccagatttagtaataacatcattagcactttccagaattta
tatcggtgccctggggatgacaagagtaaaatagtgagagtattaaacttatggcagaag
aataatgtgtttaagagtgagattattcagcctcttttggatatggcagcagggattcct
cctccagttgtcacgcctgttttggccagtactactgctgccatgagcaacacaccagga
actcccgtgacacctgttactccagccaatgtggtccaaggtttacctgatccatgggta
tctcagataacaaatacagatacgcttgcagctgtagcccagatcttacaaagccctcaa
ggccaacaacttcagcagttaatacagactttacagatacaacagcagaagccgcagcct
tccattctgcaggccctggatgctggtctcgtcgttcagctgcaggctcttacagcacaa
cttacagctgcagctgcagcagccaacacccttaaccccttagatcagggggtgtctttt
aacaagaagttgatggataggtttgattttggggaagattctgagcatagtgaagaaccg
aaaaaggaaattccagcttctcaactttctcatgtttcagaatctgtgaacaattccatt
tttcatcagatagcagaacaactacagcagcaaaaccttgaacatctcagacagcagctc
ctggaacagcaacagcctcagaaggcaacccctcaggacagtcaggaaggaacctttggg
tcagagcactctgcgtcaccatcacaaggcagcagtcagcagcatttcttggaacctgaa
gcaaatttggatgattccatagatattcagcaacaggatatggatatagatgaaggacaa
gagggcgtagaagaggagatctttgaacaagaagcaaagaaagtggctgttcgctcgaga
tcaagaacacattcacgatctcgttcaagatcaccaagaaaacgaaggtccaggtcacga
tctggctctcgaaagcgcaaacacagaaagcgctcacgctcacgctcaagagagaggaag
aggaagtcatcacgctcatactcgagtgagaggagagccagagagagggagaaagagcga
cagaagaaggggttacctccaattagatctaaaacattaagtgtgtgtagtactactctg
tgggttggtcaggtggacaagaaggcaacgcagcaagatttaaccaacctgtttgaagag
tttggacaaattgaatccattaatatgattcctcccaggggctgtgcttatgtctgcatg
gttcatcgacaagacgcatttcgggctcttcagaaacttagttctggatcatataaaatt
gggtccaaggtcattaagattgcttgggctctcaacaaaggtgtaaaaacagaatataag
cagttctgggatgtggatcttggagttacatacataccatgggaaaaggttaaagtggac
gacttggaaggttttgcagaaggaggcatgattgaccaggaaactgtaaatactgagtgg
gaaactgtgaaaagctcagaacccgttaaagagacggtgcagacaactcagagcccacct
ccagttgaaaaggagacagtggtcacaacccaggcagaggttttccctccacctgttgct
atgttacagattccagtagcaccagctgtgcctacagttagtttagttccaccagcattt
cctgtgtcaatgcccgttcctcctcctggattcagtccaattcctccacctccttttctg
cgagcaagttttaacccttcgcaaccacctcctggtttcatgccacctccagttccacca
cctgttgtaccaccacctactattccaccagtagtaccaacatcattagtgcagccaccc
ttatccatgactccagaagctgtgaaagatgttggatttggcagccttgtcttaccaggt
ggttctgttgccagcagtcttgctacttccacgctgccagctggaaatgtttttaatcct
ccaactaaacaagcagagcctgaagaaaaagtacctcatcttatagaccaccagatttct
tctggtgaaaacaccagatcagtgattccaaatgatatatcaagtagccctgcaatttta
ggaggacagccaccaaatgtgacaagcaattctggaattctgggagtccaaagaccaaat
gtatcaagtaattctgaaattcttggagtccggccatctgtttccagtacttctgggatt
attggagcccagccaccaaatattctaaataactctggaattttgggaatacagccacca
agtgtgtcgagtagttctggacttttgggagtgctaccgccaaatatccctaacaattcc
ggacttataggagtacagccaccaaatgtcccaaatatttctggacctttgggaacacaa
ccaccagctgggcctcagaacctaccccctttaaatctctctactcaaaggatgcctgca
atgccaatgttagacattcgtccaggactaataccacagacacctggaccaagattccct
ttaatacagcctggaatcccaccccaaaggggaatccccccaccgtcagtacttgattca
gctcttcatccaccaccccgtggtccttttcctccaggagatatttttagtcagccagaa
agaccttttctagttcctggaagacaaagtgtagacaacgttactaatccagagaaaagg
ataccacttgggaatgacaacattcaacaagaaggagacagagattaccggtttcctccc
atagaaaccagggaaagcattagtagaccacccccggtggatgttagggatgtggttgta
cggcctgtggatccaagagaaggtcctggaaggcctccattagatggtagggatcatttt
ggaagacctcctgtagacatgagagagaatcttgtgaggccaggtatcgatcatcttggt
cgaagagatcactttggctttaatccagagaaaccttgggggcatagagattttgacgag
agagagcaccgggttctacctgtctatggtggcccaaagggcttacatgaagaaagaggc
agatttcggtctggaaactatcgctttgaccctagaagtggtccttggaacagaggattt
ggacaagaagttcacagagattttgatgaccgcagaagaccttgggagaggcagagggat
agggatgacagagattttgatttctgcagagaaatgaatggaaatcgtcttggacgagat
agaattccaaactgggtcccccctcctcatgctcgggtttttgatttttttgaaggggcc
acttctcaacgaaaaggtgataatgtgcctcaggttaatggtgaaaataccgagagacat
gctcaaccaccacctttaccaggacagagtgatcctgaactttatgaaaaactgacatct
tcaagtgaaataagcaaggagaagagtgacacagttgctgatatagaaagtgaaccagtg
gtagaaagcacagaaactgaggggacataa
DBGET
integrated database retrieval system
