Equus asinus (ass): 106829786
Help
Entry
106829786 CDS
T04645
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
eai
Equus asinus (ass)
Pathway
eai04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
106829786 (COL25A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
eai00536
]
106829786 (COL25A1)
Glycosaminoglycan binding proteins [BR:
eai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106829786 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106829786
NCBI-ProteinID:
XP_044623345
LinkDB
All DBs
Position
3:67898196..68337710
Genome browser
AA seq
739 aa
AA seq
DB search
MLVKKHAGKGGGRELGVEDRSPAEQRCARTVPPCAALTALLSVVAVMSCLYLGVKTNDLQ
ARIAALESAKGDPSIRLLPDCLDQLKAVVQEKVERLLAQKSYEHMAKIRIAREAPSDCNC
PAGPPGKRGKRGRRGESGPPGQPGPQGPPGPKGDKGEQGDQGPRMVFPKINHGFLSADQQ
LIKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGLMGPLG
PPGQKGSVGAPGIPGINGQKGEPGLPGAVGQNGIPGPKGEPGEQGEKGDAGENGPKGDTG
EKGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGT
KGERGEAGPPGRGERGEPGAPGPKGDRGDKGDSGDLGPRGPPGQKGDQGATEIIDYNGNL
HEALQRMTTLTVTGPPGPPGPQGLQGPKGEPGSPGIPGADGEQGLKGSKGDVGDPGMPGE
KGGIGLPGLPGANGVKGEKGDSGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGEP
GLNGVKGLKGEPGQKGDRGPLGLPGASGLDGKPGSRGTDGPMGPHGPAGPKGERGEKGAM
GEAGPRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGVKGEKGEPGQPGLDGLD
APCQLGPDGLPMPGCWQKVGFIEFFLKEALSLSPHLAWPFPFTTDLLNLTFLKIVWVLKS
KRFHLQNIFRLMCLLLISS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgaagaagcatgcggggaaaggagggggccgggagctgggcgtcgaggacaga
agccccgccgagcagcgctgtgcccggaccgtgcccccgtgcgcggccctgacggctctc
ctatcagtggtggccgtgatgtcttgtctgtacctgggggtgaaaaccaacgacttgcag
gcgaggatcgccgctctcgaatccgctaagggagacccttccatccgtctgctgcctgat
tgcctggaccagctgaaagcagtggtgcaagagaaagtggagcgacttctggctcagaag
tcctatgaacacatggctaaaataagaattgcaagagaagctccttctgactgcaactgc
ccggcaggccctccggggaaacgaggtaagaggggccgaagaggagaatctggtcctcct
ggtcagcctggtcctcagggtccacctggtccaaaaggtgataagggagaacaaggtgat
cagggaccgcggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcag
ctcattaaacgccgcctgattaagggtgaccaagggcaggctggccctccaggacctcca
ggccctccaggcccaagagggcctcctggggacactgggaaagacggcccccgtggaatg
ccaggagtgcccggtgaaccagggaaaccaggagaacaaggcttgatgggtcctctgggg
cctccaggacaaaagggttctgttggagcacctggaattccagggataaatgggcaaaag
ggtgagcccgggttgcctggagcagtaggacagaatggaataccggggccaaagggagaa
cctggagaacaaggagaaaagggagatgctggagagaatggccccaaaggtgacacaggc
gaaaagggtgaccctggatcgtctgctgcaggaattaagggagaacctggagaatctggt
cgtccagggcaaaagggtgaaccagggctgcctggccttcctggacttccggggataaag
ggagaaccaggtttcattggtcctcaaggggaaccaggcttaccagggttaccaggaaca
aagggtgaacgtggggaggcagggcctcctggaagaggcgagcgaggggagcctggagcc
cccggaccaaagggtgatcgtggagacaaaggggattctggagacctgggaccaaggggt
ccacctggtcaaaagggagatcaaggagccaccgagatcatagactacaatggcaacctc
cacgaagccttgcagaggatgaccaccctgaccgtcacgggtccccctggaccgcctgga
ccgcaaggactgcaaggcccaaagggagagccaggatctccaggaatcccaggagccgat
ggagagcaggggctcaaaggctcaaagggagacgtgggggacccaggcatgccaggtgaa
aaaggaggaattggacttcctggattaccgggtgccaatggagtgaaaggggagaaagga
gactccgggctgccaggtcctcagggtccttctatcataggcccaccaggcccaccaggt
ccccatggcccaccaggccccatgggaccccatggacttcctggaccaaagggtgaacca
gggttaaatggtgttaaaggattgaagggtgaaccaggtcaaaagggtgacagaggaccc
cttggtcttccaggagcatctggcttagacggaaagccaggatcccggggtacagatggc
cctatgggaccccatggccctgcgggtcccaaaggagaaagaggtgaaaaaggagctatg
ggagaggctggacccagagggccctacggtctgcctgggaaagatggagagcctggtctc
gatggcttccctggtccacgaggcgagaagggtgatctaggagagaagggagaaaaggga
ttccgtggcgttaagggggaaaaaggggagccaggccagcctggcctggatgggctggat
gccccttgccaattggggccagatgggttacccatgcctggctgttggcaaaaggtaggc
tttatagagttctttctaaaagaagcgctctccctttctcctcacctggcctggcctttt
ccatttacaacagaccttttgaatttgacattcctgaaaattgtttgggtattaaaaagc
aaaagatttcatctccagaatatctttcgattaatgtgtttactgctgatttcttcctaa
DBGET
integrated database retrieval system
