Equus asinus (ass): 106830615
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Entry
106830615 CDS
T04645
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
eai
Equus asinus (ass)
Pathway
eai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106830615 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eai03021
]
106830615 (PCF11)
03019 Messenger RNA biogenesis [BR:
eai03019
]
106830615 (PCF11)
Transcription machinery [BR:
eai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106830615 (PCF11)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106830615 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
SelA
Motif
Other DBs
NCBI-GeneID:
106830615
NCBI-ProteinID:
XP_014695746
UniProt:
A0A8C4M698
LinkDB
All DBs
Position
20:complement(63001050..63025703)
Genome browser
AA seq
1686 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGAGSAPSKLHVSQIPPMAVKAPHQVSVQAEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLVNTLNQSDIKTSKTIPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDSKDDDV
KEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSR
EERNAKRSTKQDVRDPRRIKKTEEERPQETANQHSTKSGTEPKENIENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKTKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGI
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFN
QTGPYNDPPGSAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQNFSNPLNRASGHYF
DEKNLQSSQFGNFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQ
NPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQ
NEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQN
RTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEF
QSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFD
CTPSPSKTPVENPLNIMLNIVKNELQEPCESSKVKEEQIDTPPACTEESIATPTEIKTEN
DTVESV
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcccgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgagatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccctaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttgggtgctggatctgcaccatccaaattacacgtgtcacaa
attccccccatggcagttaaagctccccatcaggtttctgtgcaagctgagaaaagccgt
ccaggtccatccttacaaattcaggatttgaaaggaactaacagggatccccgtcttaat
aggatgagtcaacattcttctcatggaaaagatcagagtcacaggaaagaattcctagtg
aacacattgaaccaatctgatattaagacaagtaaaactataccctctgaaaaactgaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaagtctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtgcaagggtgtctgatatgagtaag
agagatccaagattaaaaaaacatcttcaggataagactgatagcaaagatgatgatgtg
aaagagaagagaaaaactgcagaaaagaaggataaagatgagcacatgaaatcatctgaa
cacagactggttggaagtagaaataaaatcataaatggcattgtacaaaaacaggataca
ataacggaagaatcagaaaaacaggggacaaaaccagggagatcaagtaccagaaagcga
tcaagatctcgatcaccgaagtctcggtcaccaattatacattctccaaagagaagagat
aggcggtcacccaaaagaaggcaaaggagtatgtctccaacctcgacacccaaagctgga
aagattcgccaatcaggagttaagcaatcacatatggaggagtttacgccaccttccagg
gaagaaagaaatgctaagagaagtactaaacaggatgttcgagatccaaggcgaataaaa
aagactgaagaggaacgaccacaggaaactgcaaatcagcattctacaaagtcaggcact
gaaccaaaggagaatatagaaaattggcaaagttccaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacagggtgatgaacatagtaaatctcctcatcta
aggcacagggagagttggtcaagcactaaagggatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattactgcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaactaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcgccattcaatgat
cgttttccacttaagcgacctaggtatgaagattcagataaaccatttgtagatagccca
gcatcgagattcgccggccttgatacaaatcagcgacttacagctttagctgaagacaga
ccattatttgatggacctagtaggccatcagtaacgagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctgcaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctctgcggtttgaggggccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccaggg
ggccagcctgtgggtggtctcaggtttgagggacatcggggtcaacctgtgggtggtata
aggtttgagggacctcatggtcagcctgtgggtggacttagatttgataatcctcgaggt
cagcctgtaggtggacttagatttgaggggggtcatggcccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacag
cagggagttggaatgaggtttgagggcccccacggtcagtcagtagctggtctgaggttt
gaagggcaacataatcaactcggtgggaaccttaggtttgagggtccacacggtcaacca
ggggttgggatcaggtttgaaggacctttagtccaacaaggaggtggaatgaggtttgag
ggtccttccgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtccg
agatttgaaggttgtcatgctttaaggtttgatggacagccaggtcagccatcactcttg
ccaagatttgatggattacatggtcagccaggtcctagatttgaacgaactggtcagcca
ggcccacagagatttgatggaccgcctggacaacaggttcaaccaagatttgatggtgta
cctcaaagatttgatggtccacaacaccagcaagcatcaaggtttgatattcctcttggt
cttcaaggcacacgatttgacaatcatccttcacaaaggcttgaatcagtatctttcaat
caaactggtccatataatgatccacctggcagtgcttttaatgccccatcccaaggactg
cagttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggacca
catggccctggaaaccagaatttctcgaatccccttaacagagcttctggacactacttt
gatgaaaagaatcttcagagttctcaatttggaaactttggcaatttacctgctccaata
acagtaggaaatattcaggcatctcaacaggttctgactggtgttgctcagccagtggca
tttggccaaggacaacaatttttaccagttcatccacagaatcctggagcatttgttcag
aatccttcaggagcccttcctaaggcatatcctgataatcatctcagtcaggtggatgta
aacgaattattttcaaaactgctaaaaacaggaattctcaaattgtcgcagcctgattca
gctacaacgcaagtaaatgaagttgctgctcagcctccccctgaagaggaggaagatcaa
aatgaagatcaagatgttccagatcttaccaattttacaattgaagaattgaaacaacgt
tacgatagtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgagg
tttacaacatcacagacagatgtatacgcagatcacttggactggcattatcggcaaaat
agaactgaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaaca
gactggatagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagtttttt
gaaaaggtgcatgaagaagtcgtgctcaaaactcaggaggctgctaaagaaaaggagttc
caaagtgtacctgctgggccagctggagcagttgagagttgtgaaatctgtcaagaacaa
tttgaacaatactgggatgaggaagaggaggaatggcatttaaaaaatgctattagagtg
gatggaaagatttatcatccatcatgttatgaagattatcaaaatacgtcttcatttgat
tgtacaccatctcccagcaagacaccagttgaaaaccccttgaacattatgttgaacatt
gtcaaaaacgaattgcaggaaccctgtgaaagttccaaagttaaggaagaacaaattgat
accccaccagcttgtacagaagaaagcattgcaacacccactgaaattaaaacagaaaat
gatacagttgagtcagtttaa
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integrated database retrieval system
