Equus asinus (ass): 106831001
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Entry
106831001 CDS
T04645
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
eai
Equus asinus (ass)
Pathway
eai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106831001 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106831001 (SKIV2L)
Enzymes [BR:
eai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106831001 (SKIV2L)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106831001 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
106831001 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
ResIII
DUF3516
HAS-barrel
Motif
Other DBs
NCBI-GeneID:
106831001
NCBI-ProteinID:
XP_014696447
UniProt:
A0A9L0J2V0
LinkDB
All DBs
Position
8:60491628..60501615
Genome browser
AA seq
1246 aa
AA seq
DB search
MMETERLVLPPPDPLDLPLRAVELGCTGRWELLNAPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKMDPWSLLSALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPISQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHRAPASGLLSLSRLLEPLDLGGGDEDETDAVGQPGSPRGD
TVSAPPCSAPLARASSLEDLVLKEASTAVSPPEPPKPPPQEQWAVPVDVTSPVGDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFADVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKRLGALEEPDTTGQLVDLPEYYNWGEELTETRGLIQRRIIDSVNGLKSLS
VGRVVVVKNQEHHNALGVILQVSSNSTSRVFTTLVLCDKPMSEDPQQKGPASPDVPYPDD
LVGFKLFLPEGPCDHTVAKLQPGDVAAITTKVLRVNGEKILEDFSKRQQPKFKKEPPLAA
VTTAVQELLRLAQAYPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIQGAQCVHSPRF
PAQYLKLRERMQIQKEMERLSFLLSDQSLLLLPEYHQRVEVLRTLGYVDDAGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSSGDPGDQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgtgctacctcccccagatcccctggacctgccccttcgg
gccgtggagctgggatgcactgggcgctgggagctgctgaatgcgcctggggctccagag
agcacccttccccatggcctccctccctgtgccccagatctgcagcaagaggcagagcag
ttgtttctgtcatctccagcctggctgcctctgcatggtgtggagcactcagcccgaaaa
tggcagaggaagatggatccctggtctctcttgtccgcattgggagccccagtcccctcc
gacttacaggcccaaagacacccaaccacaggccagatactgggctacaaggaggtcctg
ctggagaatacaaacttgtcggctacgacctccttgtctcttcgccggcccccagggccc
atctcccagtccctgtgggggaatccaacccagtaccctttctggccaggtggaatggat
gagcccaccataacagatctgagcactcgggaggaggccgaggaggagatagactttgag
aaagatcttcttactgttccacctggctttaagaaaggtgtagactttgcaccaaaagat
caccgagctccagcttccgggttgctcagtctcagccgtctgctggagcccctggatttg
ggtgggggcgatgaggatgagactgatgcagtgggacagccaggaagtcccagaggggac
actgtttcagcccctccctgcagtgctcccctggcccgagcaagcagcttggaggacctg
gtgttgaaggaagcgtctacagctgtatctcccccagagccccccaaacccccgcctcag
gagcagtgggccgttcctgtggatgtcacctccccagttggtgatttctaccgcctcatt
ccccagccggccttccagtgggcatttgagccagatgtgtttcagaaacaggctatcctg
cacttggaacggcacgactcagtctttgttgcggctcacacatctgctgggaagacagtt
gtggctgaatatgccattgcccttgcccagaaacacatgacgcgcaccatctacacgtcg
cctatcaaggctctgagcaaccagaagttccgagacttccgaaacacatttgcagatgtg
ggactgctcactggggacgtgcagctgcacccagaggcctcctgcctcatcatgacgaca
gaaatccttcgctccatgctgtatagcggctcagatgtcatccgggacctggagtgggtc
atctttgatgaggttcactatatcaatgatgctgagcgcggggtcgtgtgggaggaggtg
ctcatcatgctccctgaccatgtctccatcatccttctgagtgctactgtccccaatgcc
cttgaatttgctgactggattgggcgactgaagcgtcgtcagatctatgtgatcagcact
gttgctcgccccgtccccttggagcattatctcttcacggggaacagccccaagacccag
ggggagctcttcctattgctggactcccgaggtgccttccacacaaaggggtactacgca
gctgtggaggccaagaaggagcggatgagcaaacacgcccagaccttcggggccaagcag
cctacgcatcagggggggcctgcacaggaccgtggggtgtacctgtccctcctggcctcc
ctccgcacccgtgcacagctgcctgtggtggttttcaccttctcccggggccgctgtgat
gagcaggcctcgggcctcacctcccttgacctcaccacaagctcagagaagagtgagatt
cacctcttcctccagcgctgccttgctcgcctccgtggctctgaccgccagctgcctcag
gtcctgcacatgtcagagctcctgcatcgcggcctgggtgtgcaccacagtggcatcctg
cccatcctcaaggagatcgtggagatgctcttcagccgtggcctggtcaaggtcttgttt
gccacagagaccttcgccatgggtgtaaatatgccagcccgaacggtggtgtttgactcc
atgcgcaagcacgacggctccaccttccgggacctgctccctggggagtacgtgcagatg
gcaggccgggcgggccggaggggcctggacccgacaggcactgtcatcctgctctgcaag
ggccgcgtgcctgaaatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggatgccctc
agggtggaggacatgatgaagaggagcttctctgagtttccatcccgaaaggacagcaag
gcccatgaacaggctctcgctgaactgaccaagaggctgggggccttggaggagcctgac
actactggccaactggttgacctgcctgagtattacaactggggagaggaactgacagag
acccgaggcctgatccagcgacgcatcatagattctgtgaatgggctgaaatctctctca
gttggaagggtggttgttgtgaagaatcaggagcatcacaacgcattgggtgtgatcctg
caggtctcctcgaactccaccagcagagtattcacaacgctggtcttatgtgataagccc
atgtctgaggacccacagcagaaggggccagcctcccctgatgtgccctacccggatgac
ctcgtgggattcaagctgttcctgcctgaaggaccctgtgaccacactgtggccaagctc
cagccaggagatgtggctgccatcaccaccaaggtgctccgggtgaacggggagaagatc
ttggaggacttcagcaagagacagcaaccgaaattcaagaaggagcctcccttggcagct
gtgaccactgctgtccaggaactgctgcgtctggcgcaggcctacccagcaggaccgcct
accctcgaccctgtcaacgacctgcagctcaaagatgtgtcagtggtagaggggggtctc
cgggcccggaagctagaggagctgatccagggggctcagtgtgtgcacagcccccgtttc
cctgcccagtacctgaagctgcgggagcgaatgcagatacagaaggagatggagcggctg
agcttcctgctgtcggatcagtcactgctgctgctccctgagtaccaccagcgagtagag
gtgctccgaaccctgggttatgtagatgacgcgggcaccgtgaagctggcagggcgggtg
gcttgtgccatgagcagccatgagctgctcctcactgagctcatgttcgacaatgccctg
agtgccctgcggcccgaggagattgcagccctactctctggcctggtgtgccagagctct
ggggaccctggggatcagcttccaagtaccctcaaacagggagtggaacgtgtccgggct
gtggccaagaggattggtgaagtccaagtggcctgtggcctgaaccagacagtggaggaa
tttgtgggggagctgaattttgggctggttgaggttgtatatgagtgggcccggggcatg
cccttctccgagttggcagggctctcagggacccccgaaggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcactgcggggggcagcccgcctggtaggtgagcct
gtgctaggtgccaagatggagacagcagctaccctgctacggagggacattgtctttgcg
gccagcctctacactcagtga
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