Equus asinus (ass): 106834365
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Entry
106834365 CDS
T04645
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
eai
Equus asinus (ass)
Pathway
eai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106834365 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eai03041
]
106834365 (SF3B1)
03036 Chromosome and associated proteins [BR:
eai03036
]
106834365 (SF3B1)
Spliceosome [BR:
eai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106834365 (SF3B1)
Complex B
106834365 (SF3B1)
Complex C
U2 SnRNP specific factors
106834365 (SF3B1)
Chromosome and associated proteins [BR:
eai03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106834365 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
106834365
NCBI-ProteinID:
XP_014701449
UniProt:
A0A8C4MMY3
LinkDB
All DBs
Position
4:19164372..19223461
Genome browser
AA seq
1337 aa
AA seq
DB search
MRREQPQLFFFVAAATSGSSWERQFRLCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDE
AQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAP
VALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKM
NARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGGAASQPPSKRKRRWDQTADQT
PGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAAT
PGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETP
TPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWR
WEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQ
TEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNG
TPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLV
RPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNT
TARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLV
EIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFL
KAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIK
TEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKM
VMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKP
YLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYP
EVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGA
EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ
NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIY
AVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVI
QAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRI
YNDDKNTYIRYELDYIL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagagagcagccccagctgtttttcttcgtggcagcggcgacgagcggaagttct
tgggagcgccagttccgtctgtgtgttcgagtggacaaaatggcgaagatcgccaagact
cacgaagatattgaagcacagattcgagaaattcaaggcaagaaggcagcccttgatgaa
gctcaaggagtgggccttgattctacaggttattatgaccaggaaatttatggtggaagt
gacagcagatttgctggatatgtgacatcaattgctgctactgaacttgaagacgatgac
gatgactactcatcatctacaagtttgcttggtcagaagaagccgggatatcatgcccct
gtggcattgctcaatgatataccacagtcaacagaacagtatgatccatttgccgagcac
cgacctccaaagattgcagaccgtgaagatgaatacaaaaagcacagacggaccatgata
atttccccagagcgtcttgatccttttgcagatggagggaagacccctgatcctaaaatg
aatgctaggacttacatggatgtgatgcgagaacagcatttgactaaagaagagagagaa
attaggcagcaactagcagaaaaagctaaagctggggaactaaaagtcgtcaatggagga
gcagcgtcccagcctccctcaaaacgaaaacggcgttgggatcaaacagctgatcagact
cctggtgccactcccaaaaagctatcaagttgggatcaagcagagacacccggacatacc
ccttccttaagatgggatgagacaccaggtcgtgcaaagggaagtgagactcctggagca
accccaggctcaaaaatatgggatcctacacctagtcacacaccagcgggagctgctact
cctggacgaggtgatacaccaggccacgcgacgccaggccatggaggcgcaacttccagt
gctcgtaaaaacagatgggatgagacccccaaaacagaaagagatactcctggacatgga
agtggatgggctgagactcctcgaacagatcgaggtggagattcaattggtgaaacacca
actcctggagccagtaaaagaaaatcacgttgggatgaaacaccagctagtcagatgggt
ggaagcactcctgttctgacccctggaaaaacaccaattggcacaccagccatgaacatg
gctacccctactccaggccacattatgagtatgactcctgaacagcttcaggcttggcgg
tgggagagagaaattgatgagagaaatcgcccactttctgatgaagaattagatgctatg
ttcccagaagggtataaggtacttccccctccagctggttatgttcctattcgaactcca
gctcgaaagctgacagcaactccaacacctttgggtggtatgactggtttccatatgcaa
actgaagatagaactatgaaaagtgttaatgaccagccatctggaaatcttccatttttg
aagcctgatgatattcagtactttgataaacttttggttgatgttgatgaatcaacactt
agtccagaagagcaaaaagagagaaaaataatgaagttgcttttaaaaattaagaatgga
acacctccaatgagaaaggctgcattgcgtcagattactgataaagctcgtgaatttgga
gctggtcctttgtttaatcagattcttcctctactgatgtctcctacacttgaggatcaa
gagcgtcatttacttgtgaaagttattgatagaatattatacaaacttgatgacttagtt
cgaccgtatgtgcacaagatccttgtcgtcattgaaccgttgttgattgatgaagattac
tatgctagagtggaaggccgagagattatttctaatttggcaaaggctgctggtctggct
actatgatctccaccatgagacctgatatagataacatggacgaatatgtccgtaacaca
acagctagagcttttgctgttgtagcctctgccctgggcattccttcattattgcctttc
ttaaaagctgtgtgcaaaagcaagaagtcctggcaagcaagacacactggtattaagatt
gtacagcagatagctattcttatgggctgtgccatcttgccacatctcagaagtttagtt
gaaatcattgaacacggtcttgtggatgagcagcagaaagttcggaccattagtgctttg
gccattgctgccttggctgaagcagcaactccttatggtatcgaatcttttgattctgtg
ttaaaacctctatggaagggtatccgccaacacagaggaaagggtttggctgctttctta
aaggctattgggtatcttattcctctcatggatgcagaatatgctaactactatactaga
gaagtgatgttaatccttattcgagaattccagtctcctgatgaagaaatgaagaaaatt
gtgctgaaggtggtaaagcagtgttgtggaacagatggtgtagaagcaaactacattaaa
acagagatccttcctcctttttttaaacatttctggcaacatagaatggctttggataga
agaaactaccgacagttagttgatactactgtggagttggcaaacaaagtaggtgcagca
gaaattatatccaggattgtggatgatttgaaagatgaagccgaacagtacagaaagatg
gtgatggagacaattgagaaaattatgggcaacttgggagcagcagatattgatcataaa
cttgaagaacaactgattgatggtattctttatgcttttcaagaacagactacagaggac
tcagtaatgttgaacggctttggcacagtggtcaatgctcttggcaaacgagtcaaacct
tacttgcctcagatctgtggtacagttttgtggcgattaaataacaaatcagccaaagtt
aggcagcaggcagctgacttgatctctcgaactgctgttgtcatgaagacttgtcaagag
gaaaaattgatggggcacttgggtgttgttttgtatgagtatttgggtgaagagtaccct
gaagtgttgggcagcattcttggagcactgaaggccattgtaaacgtaataggtatgcat
aagatgacgcccccaattaaggatctgctgcctagactcactcccatcttaaagaacagg
catgaaaaagtacaagagaattgtattgatcttgttggacgtattgctgacaggggagct
gaatatgtctctgcaagagaatggatgaggatttgctttgagcttttagagctcttaaag
gctcacaaaaaagctattcgtagagccacagtcaacacttttggttatattgcaaaggcc
atcggccctcacgatgtattggctacacttctaaacaacctcaaagttcaggaaaggcag
aacagagtttgtaccactgtagcaatagctattgtcgccgaaacatgttcacccttcaca
gtactacctgccttaatgaatgaatacagagttcctgaactgaatgtccaaaatggagtg
ttgaaatcactttcctttttgtttgaatatattggtgaaatgggaaaggactacatttat
gctgtaacacccttacttgaagatgctttaatggatagggaccttgtacacagacagacg
gctagtgcggtggtgcaacacatgtcacttggggtttatggatttggttgtgaagattcg
ctgaatcacttgttgaactacgtatggcccaatgtgtttgagacatctccccatgtaata
caggcagttatgggagctctggagggcctgagagttgctattggaccatgtagaatgttg
cagtactgtttacagggtttgtttcacccagcccggaaagtcagagatgtgtactggaaa
atttacaactccatctacattggttcacaggatgctctcatagcacattacccaagaatc
tacaatgatgataagaacacctatattcgttacgaacttgactatatcttataa
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