Equus asinus (ass): 106835003
Help
Entry
106835003 CDS
T04645
Symbol
SPG11
Name
(RefSeq) spatacsin isoform X2
KO
K19026
spatacsin
Organism
eai
Equus asinus (ass)
Pathway
eai05014
Amyotrophic lateral sclerosis
eai05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
106835003 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
106835003 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eai03400
]
106835003 (SPG11)
DNA repair and recombination proteins [BR:
eai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
106835003 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
106835003
NCBI-ProteinID:
XP_014702562
LinkDB
All DBs
Position
2:189291132..189366969
Genome browser
AA seq
2445 aa
AA seq
DB search
MAAEQAAGSAAAGCSCNAAAMERVLPMLLVPVPAETTGRLGARAQLHREQEVLGSLTASG
GLQVLSLAPGGRGGGGCRLDGPFRHFVWEDSHNSSAPTDKPRLLALTDNYELLIYEFNLK
DGRCDATILYSYSEERLQKLVEDLNISISLLSLRILSFHNNTSLLFINKCIILHVVFPER
DAEIRVLNCFTLPLPAQAVDRIIDSQLCRGILFVLSSLGWIYIFDIVDGTHVAHVDLALH
QEDMCNEQQQEPAKISSFTSLKVSQDLDVVVIVSSSNSAIALNLNLYFRQHPGHLLCERT
LEDSPIEGPKEIDEDDPANSDYNMKLTKFSFQVDRSWKAQLSSLNETIKSSKLEVSHCAP
WFQDILHVEPSESGNHGTSVPGWAFIPQDIMDRQYNFPQKDHTKTNDPGRSWKIVHINEQ
EEPIILKCVSVTGFTALFTWEAERMGCTIVLWDLETQGMQCCPLGKKCIPVDSSGDQQLC
LVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSIPIHALEAGIENRQ
LDTVDFFLKSKENLLNPSSKSSVADQLDHFPSHLYLRNVEELTPALDLLCSAIRESDSET
QSKHFSEQLLNLTLSFLNKQIKELFIHNEELDEHLQKGVNILTSYINELRTFMIKFPWKL
TDAIDEYDANENVPKVKESHMWEKLSVEEVITNAVLNNKIPEAQTFFRINSHSAQRLEEL
IRIGLDLVFDSLKKNNIKEASELLKNMGFDVKDQLLKICFYTTDKNIRDFLVEILKEKNY
FSEKEKTTIDFVHRVEKFYSGHFQENVQIQSFPRYWIKEEDFFKHKSVLDSFLKHDHKDK
FNRQDHRIVLNWAQWWNRITQESILLPRISPEEYKSCSPEALWRYLTARHDWLNIVTWIG
EFQTQSSDSSLQQHKWPPLTVDVIDHNTCCSNYMRNEILDKLARNGIFLRSELEDFELFL
LRLNRIGGVMQDTLPVQNYRSKEGWDFHSHFILYCLERSLQYLLYVYLDCYKLSPPNCPF
LERKELHEAHPWFEFLVQCRQVSSNLTDPKLIFQASLANAQILIPSNQASVSSMLLEGHT
LLALATTMYAPGGVSQVVQNEENENCLKKVDPQLLKMALTPYPKLKTALFPQYTAPSVLP
PDITLYHLLQSLLPFDPSRLFGWQSANTLAIGDASSHLPHFSSPDLVNKYAIVERLNFAY
YLHHGRPSFAFGTFLVQELTKSKTPKQLIQQVGNEAYVLGLSSFHVPSIGAACVCFLELL
GLDSLKLRVDMKVANIILSYKCGNEDAQYSFIRESLAEKLSKLAAGEKATTGELLVLLEE
GIWNSIQQQETKRLSSESSSQWALVVQFCRLHNVKLSTSYLIECAKANDWLQFIIHSQLH
NYHPEEVKSLLQYFSPVLQDHLQLAFENLPSVSNSRMDNDQVCNRSPQELQRNKEETADF
FKILLQCSEEPNSWCWLLAEAVKQQAPILSVLASCLQDSSAIPCLCVWIITSVEDSVAAE
AMGQIQGSTEGHTWDLEDLSVIWRTLLTRQKSKTLIRGFQLFFKDSPLLLMMEMYELCMF
FKNYKEAKAKLLEFQKNLETLETAATKVHTVIPAPWLKEQVCFLLKLMLQQCRTQYELGK
LLQLFVGVEHLFPDGPDVKKLCVLSQILKDTSIAINHVIITSYSLETFQHECRSILEKLE
TDGQFALARRVAELAELPVDNLVIEEITQEMQTLKHIDQWSLKQAKIDFWKKCHENFKKN
SISSKAASSFFSAQALVACAYPTEEGQSSVEERHLLLTLAGHWLAQEDPVPVNQLEELEK
QIWLCRITQHTLRGSQGETEPRFSQQISTSGELSFDSLASEFSFSKLAALNTSKYLELNG
LPSKETCENRLDWKEQASLHFLIGRLLDDGCVHEASRVCRYFHFYNQDVVLVLHCRALAS
GEASVDDLHPEIHALLQSAALPEGEEEPGIPLRKAQSTSSLDSQSFVMLPSSDEVVTNLE
TLTGKCLHGKNYCRQILCLYELAKELGCSYTDVAAQDGEAMLRTILASQQPDRCKRAQAF
ISTQGLEPDTVAELVAEEVTRELLTPSERAGQKQMFTPAEESQTFLQLTTLCPDRTLVGM
KLLDKISSVPHGELSCTTELLILAHHCFTLTCHMEGIIRVLQAARLLTDNHLAPNEEYGL
VVRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKH
NMIALCFSMCREIGENHEAAACIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAES
YAKDSCVRQALHCHRLTKLITLQIHFLNTGQNTMLINLSRHRLMDCIMTLPRFYQASIVA
EAYDFVPDWAEILYQRVILKGDFNYLEEFKQQRLLKSNIFEEISKKYKQHQPTDTVVKNL
KKLLTYCEDVYLYYKLAYEHKFCDIVNVLLKDPQIGCCLKDMLAG
NT seq
7338 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagagcaggcggccggaagtgccgctgccggctgtagctgcaacgctgcagcc
atggagcgggttctgcctatgttgttggtgccagttcccgccgagacaacggggcggcta
ggggcccgggcgcagctgcacagagagcaggaggttctggggagcctgacggcctcgggc
ggccttcaagtgctctccttggcgcccggaggccggggcgggggcggctgccgcctggat
ggcccctttcggcattttgtgtgggaggattctcataacagcagcgcaccaacagacaag
cccagactgctcgctcttactgacaattatgaactgctcatctatgaatttaatttgaaa
gatggaagatgtgatgcaaccattttgtatagctatagtgaggagagattgcaaaagctc
gttgaagatctaaatatcagtatttccttattatctttgagaattctgtcatttcacaat
aacacatcattattgttcatcaacaagtgtatcatcctgcacgttgtatttcctgaaaga
gatgctgagattagagtactcaactgttttacattacctctgcctgcacaggcagtggac
aggattattgactcgcagctctgcagaggaattctctttgttttgagtagtttaggctgg
atctatatttttgacattgtggacggtacacatgtagctcatgtggatttagcacttcac
caagaagatatgtgtaatgagcagcaacaggagccagccaagatttcttcttttacttca
ctgaaagtgtctcaagacctagatgttgtagtgattgtcagctcctccaactctgcaatt
gctcttaacttaaatttgtatttcaggcaacacccaggacacctactatgcgaaagaact
ctagaagacagtcctattgaaggccctaaggagatagatgaagatgatcctgctaattct
gactacaacatgaaactgaccaagttttccttccaagttgataggtcttggaaagcccag
ctatcatcattgaatgaaacaataaagagctccaagctggaggtttcccattgtgcccca
tggttccaggatattttacacgtggagccttctgaatctggtaaccacggtaccagtgtg
ccaggctgggccttcattccacaggacataatggaccgccagtataattttccacagaaa
gatcacaccaagaccaatgatccaggaagatcctggaaaatagtgcacatcaatgaacaa
gaggaacccatcatccttaaatgtgtgtctgtgacaggattcactgcactgtttacttgg
gaagcggagaggatgggctgcaccattgtcctttgggatctggagacccagggcatgcag
tgttgtcctcttggcaaaaaatgtattcctgtagacagtagtggagaccagcagctgtgc
cttgttttgacagaaaatggactttccctgattttgtttggtttgactcaagaggagttt
ttaaatagactaatgattcatggaagtgccagcactgtggactctctctgccatctcaat
ggttgggggaggtgctcaatccccatacatgcactagaggctggcatagaaaatcgtcag
ctggacacagtagatttctttttgaagagcaaggaaaatcttttgaatccatcctcaaaa
tcttctgtagctgatcagcttgaccactttccatcccatttgtatttaagaaatgtggaa
gagctgacaccagcattggatttactttgctcagcaattagagaaagtgattctgaaacc
cagagcaaacacttctcagaacagttgcttaatcttacactgtctttccttaacaaacaa
ataaaggagctttttattcacaatgaagagctagatgaacatctacagaagggagtgaac
attttgaccagctacattaatgaacttcgaaccttcatgataaagtttccttggaagcta
acagatgccatagatgaatatgatgcaaatgaaaatgtccccaaagtaaaggagagccat
atgtgggagaaactcagtgttgaggaagttatcaccaatgccgttttaaacaacaaaata
ccagaggcacaaactttctttaggattaacagtcattctgctcaaagacttgaggagctg
attagaataggcctagatttggtctttgacagtttgaaaaagaataatataaaggaagcc
tccgaacttttgaagaatatgggctttgatgtaaaagaccagctgctcaagatatgcttc
tatacgactgataaaaatatacgggactttttggttgaaattttaaaagaaaaaaattat
ttttctgaaaaagaaaaaacaactatagactttgtgcatcgagttgagaagttttattca
ggacatttccaagaaaatgtgcagatccagtcctttcccagatattggataaaggaagaa
gattttttcaagcacaaatctgttttggactcattcctgaaacatgatcataaagataaa
tttaacagacaggatcatagaattgtgttaaattgggcccagtggtggaatcgaataaca
caagaatccatccttctccccaggataagtccagaagaatacaaatcatgttctcctgaa
gccctctggaggtacctcacagctcgccatgattggttaaacattgtcacgtggattgga
gaatttcagacccagagtagtgattcttcacttcagcagcacaagtggccccctctgact
gttgatgttattgaccacaacacttgctgcagcaactacatgaggaatgaaattttagat
aagttggccaggaatgggatttttcttagatctgaactagaagactttgaactcttcctc
ttaagactgaaccgtattgggggtgtgatgcaagataccctccctgttcaaaactacagg
tccaaagaaggttgggacttccattctcacttcattctctattgtttggaacgcagtctg
cagtatcttctttatgtctatctagactgttacaaacttagtcctcctaattgtcctttt
ttggaaagaaaagaattacatgaagctcacccgtggtttgaatttttagttcagtgtcga
caagtttccagtaatttaacagatcccaaattaatcttccaggctagccttgcaaatgct
cagattctgattcccagcaaccaggccagtgtgagcagtatgctattggaaggacatacc
ctcctggcccttgctaccacaatgtatgctcctgggggtgtcagccaggttgttcagaat
gaagaaaatgagaactgtttgaagaaagtagacccccagctactgaagatggcattaact
ccttaccccaagcttaaaactgctctcttcccacagtacactgcccctagtgtcctgcca
cccgacattacactctaccaccttcttcagtcgttattgccctttgatcccagcagattg
tttggctggcagtctgccaacacactagctataggagatgcatcgagtcacctcccccat
ttctctagcccagacctggttaataagtatgctatcgtggaacgtctgaattttgcttat
tatttacatcatggacggccatcatttgcatttggtacttttctggtccaggaattaacc
aagagcaagactcccaagcagctgatccagcaagtaggcaatgaagcctatgttttaggc
ctctcctccttccatgtaccttcaataggagctgcctgtgtttgtttcttggaattgctt
ggcctcgacagcctcaagctcagagttgatatgaaagtggccaatataattttgagctac
aagtgtggaaatgaagatgctcagtacagctttatcagggagtctctagctgaaaaacta
tctaaactggctgcgggtgaaaaggcaaccacaggagaattgcttgttctcttagaagag
ggtatatggaacagcattcagcagcaggaaacaaagagattatccagtgaatccagcagc
caatgggcattagtggtacaattctgcaggctccacaatgtgaaactgagcacgtcttac
cttatagagtgtgccaaagcaaatgactggttacagttcattattcatagccagctccat
aattaccacccagaggaggtgaaatctcttctccaatatttcagccctgtccttcaagac
cacttacagctggcttttgagaacttgccctcagtgtccaactccagaatggacaatgat
caagtctgcaacaggtccccccaggaactccagagaaacaaagaagagacggctgatttc
tttaaaattctgctgcagtgctcagaggagccaaactcctggtgttggctcctagctgaa
gcagtgaaacaacaggcccctatcctcagtgtcctggcctcgtgtctccaggattccagt
gctattccttgtctctgtgtttggatcatcacttctgtggaggacagtgttgcagctgaa
gcaatgggacaaattcagggttcaacggagggccacacttgggaccttgaggacctctca
gtcatctggaggacattattaacgagacagaagagcaaaactctcatcagaggtttccaa
cttttctttaaggattccccgttgctattgatgatggaaatgtatgaactgtgtatgttc
ttcaagaattataaggaagccaaagcaaaattattggagttccagaagaatcttgaaact
cttgaaacagcagccacaaaggtccacactgtcatccctgccccatggctgaaggagcag
gtgtgctttcttttgaagcttatgttgcagcagtgtaggacccagtatgagctggggaag
cttttacagctgtttgttggagtagagcatctcttccccgatggtccagatgtgaagaag
ctgtgtgtcctcagccagattttgaaagatacgtccatagccattaatcatgtaattatt
accagctacagccttgagacttttcagcatgaatgtagatctatcttggaaaaactggag
acagatggacagtttgctttggccaggagagtagcagaattagctgagttacctgtggac
aacttggttattgaagagataacacaggaaatgcagaccttaaaacacattgaccagtgg
tctctgaaacaagcaaaaattgacttctggaaaaaatgccatgagaattttaagaaaaat
tccatttcaagcaaagcagcttcttcctttttctcagcccaggcccttgtggcatgtgcg
tacccgactgaggaggggcagagcagcgttgaggagcgccatctgctgctcactctggca
gggcactggcttgctcaggaggacccggtgcctgtcaaccagctggaggagctggagaag
cagatctggctgtgccgcatcacccagcacaccctcagaggaagccagggggaaacagag
cccagattttctcaacagatctcaactagtggggaactttcttttgatagcttagccagt
gagttttcattctccaagttggctgctctgaacacatcaaaatacttagaacttaatggc
cttccatccaaagagacttgtgagaacagactggattggaaggagcaggcgtcactacac
tttttgattgggcgcctcttggatgatggctgtgtgcatgaagcaagtagagtgtgccgg
tattttcatttctacaaccaagatgttgtcttggtattgcactgtagagcactggcttca
ggggaagctagtgtggatgacctgcatccagagatccatgctctcctacaaagtgctgcg
ctgcctgagggagaagaagaacctggcattcctctaaggaaagcccaaagcacttcaagt
ttggatagtcagtcgtttgtgatgctgccctcaagtgatgaagtggtgactaatctggaa
actctgactggcaaatgcctccatgggaaaaactactgccggcagatcctctgtctgtat
gaacttgccaaggagttgggttgttcctacacagatgtggctgcccaggatggtgaggcc
atgctccggacaatcttggcctctcagcagcctgaccggtgcaagcgagcccaagccttc
atcagcacccagggcctcgagccagacacggtggctgaacttgtggccgaggaggtgacc
agagagctgctgaccccatcagaaagagcaggacagaagcagatgttcaccccagcagag
gaaagccagacttttcttcaactgaccactttgtgtccagaccgcacattggtaggcatg
aagttgttggataagatttcctccgttccccatggggagttgtcttgcaccacagagctg
ctgatcctggcccatcactgcttcacgctgacatgccacatggagggcatcatccgagtc
ctgcaggccgcccggctgctcacagacaaccacttggcccccaatgaagagtacgggctg
gtggtgcgtctcctcactggcattggaaggtacaatgagatgacatacatatttgatttg
ctgcataaaaagcactactttgaagtgctgatgaggaagaaattagatccaagtggtacc
ctgaagacagccctactcgactacatcaaacgctgccgccctggggacagtgagaagcac
aacatgattgccttgtgcttcagcatgtgccgtgagattggggagaaccatgaggcagct
gcctgcatccagctgaaattgatcgagtctcagccctgggaggacagcctcaaagatggg
caccaactgaagcagctgctgctgaaggccctgactctgatgctggatgcagcagagagt
tatgccaaggactcttgcgtgcgacaggccctgcactgtcatcggctcaccaagttgata
acactgcagattcactttctgaacactggccagaacacaatgctcatcaacctgagccgc
cacaggctgatggactgtatcatgaccctacctcggttctaccaggcttctattgtggcg
gaggcctatgactttgttcctgattgggctgaaattctataccaacgagtgattcttaaa
ggagactttaattacttggaagagtttaagcagcaaaggttattaaaatccaatatattt
gaagagatttcaaaaaaatataaacaacatcagcctaccgacacagttgtgaaaaacctg
aagaagttactcacgtattgtgaagatgtctacttgtattacaaactagcttatgaacac
aaattttgtgatattgtaaatgtgcttctgaaggaccctcagatagggtgctgtttaaag
gacatgctagcaggttag
DBGET
integrated database retrieval system
