Equus asinus (ass): 106836522
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Entry
106836522 CDS
T04645
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
eai
Equus asinus (ass)
Pathway
eai03013
Nucleocytoplasmic transport
eai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106836522 (UPF2)
03015 mRNA surveillance pathway
106836522 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106836522 (UPF2)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106836522 (UPF2)
mRNA cycle factors
P-body specific factors
106836522 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
106836522
NCBI-ProteinID:
XP_044617867
UniProt:
A0A8C4MNU4
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Position
29:18362039..18474172
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AA seq
1270 aa
AA seq
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MPAERKKPASMEEKESLLNNKEKDCGERRPVSSREKPKDEIKLTAKKEVIKVLEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEKKKHEEEERKKQEEQAKRQQEEEAAQLK
EKEESLQLHQEAWERHQLRKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKTIT
EQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLLQ
VWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRESH
THVSVVISFCRHCGDDIAGLAPRKVKSAAEKFNLGFPPSEIISPEKQQPFQNLLKEYFTS
LTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLDE
NMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAIL
FKDNEKSCQNKESNKDDSKEAKEPKDSKEVSSPDDLELELENLEISDDTLELEGGDEAED
LTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRK
KLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIET
KNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHL
RTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKD
LSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVG
IHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVN
PDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVW
TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDS
MTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDS
NKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAI
PLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQ
QAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNAD
LIFKTGGRRR
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacaac
aaggaaaaagactgcggtgaaaggcggccagtgagcagcagggagaaaccaaaagacgag
atcaagcttactgccaagaaggaggttattaaggtccttgaagataaaaagaagaaactg
gaagaagataagagaaaaaaagaagacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaggaattaaagaaaaaagaagaagaaaaaaagaaacatgaagaggaagag
agaaagaagcaagaagagcaggcaaaacgtcagcaagaagaagaagccgcccagttgaaa
gagaaagaggaatccttgcagcttcatcaggaagcttgggagcgacatcagttaaggaag
gaacttcgtagcaaaaaccaaaatgctcccgacagccgaccagaggaaaatttctttagc
cgactagattcaagtttgaagaaaaatactgcttttgtcaagaaactaaaaactattacg
gaacaacagagagactccttgtcccatgattttaatggcctaaatttaagcaagtacatt
gcagaagctgtagcttctattgtggaagcaaagctaaaaatatctgatgtgaattgtgct
gtgcacttatgctctctctttcaccagcgctatgctgactttgccccatcccttcttcag
gtttggaaaaaacattttgaggcaaggaaagaggagaaaacacctaacattaccaagtta
agaactgatttacgtttcattgcagaattgacaatagttgggattttcactgacaaggaa
ggtctttccttgatctatgaacagctaaaaaatattattaatgctgatcgggaatcccat
actcacgtttctgtggtgattagtttttgtcgacattgtggagatgatattgccggactt
gccccaaggaaagtgaagagcgctgccgagaagttcaatttgggttttcctcctagtgag
ataattagtccagagaaacaacaacctttccagaatcttttaaaagaatactttacgtct
ttgaccaaacacctgaaaagggaccacagggagctacagaatactgagagacaaaacagg
cgtattctgcattctaaaggagagctaagtgaagatagacataaacagtatgaggaattt
gctatgtcttatcagaagctgctggcaaattctcaatccctagcagaccttttggatgaa
aacatgccagatcttcctcaagacaaacccacaccggaagagcatgggcctggaattgat
atatttacacctggtaaacctggagaatatgacttggaaggtggtatatgggaagatgaa
gatgctcggaatttttacgaaaacctcattgatttgaaagcctttgttccagccatcttg
tttaaagataatgaaaaaagttgtcagaataaagagtccaacaaagatgattccaaagag
gcaaaagaacctaaggatagtaaggaagtatcaagtcccgatgatttagaacttgagttg
gagaacctagaaattagtgatgacactttggagttagagggtggcgatgaagctgaagat
cttacaaagaaacttcttgatgagcaagaacaagaggatgaagaagccagcactggatct
catctcaagctcatagtagatgctttcctccaacagttgcccaactgtgtcaaccgagat
ctgatagacaaggcagcaatggatttttgcatgaacatgaacacaaaagcaaataggaag
aagttggtgcgggcactctttatagttcccagacaaaggttggatttgctaccattttat
gcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgttcc
atgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaacattgaaaca
aagaacaaaacagttcgttttattggagaactaactaagtttaagatgttcacaaaaaat
gatacactgcattgcttaaagatgcttctatcagacttttcccatcaccatattgaaatg
gcatgtaccctactggaaacatgtggaagatttctttttagatctccagaatctcacctg
aggaccagtgtacttttggaacaaatgatgagaaagaaacaggcaatgcatctcgatgca
agatatgtcacaatggtggagaatgcatattactactgcaacccgcctccagctgagaaa
acagtgaaaaagaaacgtcctcctctccaggaatatgtccggaaacttttgtacaaggat
ctctccaaggttaccactgagaaggttttgagacagatgcgaaagttgccctggcaggac
caggaagtgaaagactacgttatttgttgtatgataaacatctggaatgtgaaatataat
agtattcattgtgtagccaacctcttagcaggactggtgctctaccaagaggatgttgga
atccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaacct
aaatttaatcagagacgtatcagcagtgccaagttcttaggggaactttataattaccga
atggtggaatcagctgttatttttagaactctgtattcttttacttcatttggtgttaac
cctgatggctctccgagttcactggaccctcctgagcatcttttcagaattagactagtg
tgcactattttggatacctgtggccagtactttgacagaggttccagtaaaagaaaactc
gattgcttccttgtatattttcagcgttatgtttggtggaagaaaagtttggaggtttgg
acaaaagaccatccatttcctattgacatagattacatgatcagtgatacactagaactg
ctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacaagac
ttggaacgagaattcttaataaaactaggcctagtaaatgacaaagattcaaaagattct
atgacagaaggagaaaatcttgaagaggatgaagaagaagaagaaggaggagctgaaaca
gaagaacaatctggaaatgaaagtgaagtaaatgaaccagaggaagaggagggttctgat
aatgatgatgatgaaggagaggaagaagaggaagagaatacagattaccttacagattca
aacaaggagaacgaaactgatgaggaaaataccgaggtaatgattaaaggtggcggactt
aagcatgtgccttgtgtagaagacgaggacttcattcaagccctggataagatgatgctg
gaaaatcttcagcaacgaagtggcgaatctgttaaagtgcaccaactcgatgttgctatt
cccttgcacctcaaaagccagctcaggaaagggcccccacttggtggtggggagggagaa
gcagagtctgcagacacaatgccgtttgtcatgttaacaagaaaaggcaataaacagcag
tttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcattggaaccagcaa
caggcagaacaggaagagaggatgagaatgaaaaagctcacactagatatcaatgaacgg
caagaacaagaagattatcaagaaatgctgcagtctcttgcccagcgccccgctccagca
aacaccaatcgggagcggcggcctcgttaccaacatccaaagggagcgcctaatgcggat
ctaatctttaagactggtgggaggagacgttga
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