Equus asinus (ass): 106838126
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Entry
106838126 CDS
T04645
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
eai
Equus asinus (ass)
Pathway
eai03008
Ribosome biogenesis in eukaryotes
eai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106838126 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
106838126 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106838126 (XRN1)
03009 Ribosome biogenesis [BR:
eai03009
]
106838126 (XRN1)
03016 Transfer RNA biogenesis [BR:
eai03016
]
106838126 (XRN1)
03036 Chromosome and associated proteins [BR:
eai03036
]
106838126 (XRN1)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106838126 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
106838126 (XRN1)
Ribosome biogenesis [BR:
eai03009
]
Eukaryotic type
Pre-60S particles
RNases
106838126 (XRN1)
Transfer RNA biogenesis [BR:
eai03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
106838126 (XRN1)
Chromosome and associated proteins [BR:
eai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106838126 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
106838126
NCBI-ProteinID:
XP_014707527
UniProt:
A0A8C4L6Z4
LinkDB
All DBs
Position
21:20409194..20527170
Genome browser
AA seq
1705 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKIAFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKSYKEKRKSKDQENSICWAALDTNGEEVVASKDNVEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISALSIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNRHSECLM
CWYDRDTEFTYPSPWPEKFPAIERCCTRYKMISLDAWRVDINKNKITRIDQKALYFCGFP
TLRHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDDLSIENVASSVLGKSVFVNWP
HLEEARVVGVSDGDTKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWTKEVQGISEF
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFD
SRFSNIRTLDDLFPPRSMVFMLGTPYYGCTGEVQESGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFCYIAKNSQEDVFYEDDIWPGED
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAVVKPQPAVNQYSS
ASSVSSGHLGGLNHSPQSLFVPTQVPTKDDDEFCSIWQSLQGSGKVQHFQPSLQEKGAVL
PQEISQVTQHHKSGFNDNSVKCQQRKHEPHRKFKEECKSPKTESRSQKMSHKQPTPGIEK
FLASLNISKESGVQSSHFEEPPSEEHLSPQSFAMKGTRMLKEILKIDGFDTVDHKNEIKQ
FGNEISSNRRDEYGSASQPKQNKKLTSCMNKAHSASEYRSAQSMDNVCWPVPSHIPPVST
PVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFA
LQQLGSLGVNFPLPPPLIPNYPPAVPPGTIPPVFPQPTGWDHYGSNLALGAANIMPPSSH
LFGSMPWGPPVPAPGKPFQHTSYPGAMPMAGGMRGGAHNQFIPLQVTKKRIANKKNFENK
EAQSSQATPLQTSQPGSSSVTKVIPQGSSSASLKSSQITQPAPSFQVEAAPQGHSVSHHK
STPSSSSRRKSRKLAVNFGVSKPSE
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccctaagttttaccgatggatctcggagcggtatccctgcctcagcgaagta
gtgaaagagcatcagattcctgaatttgacaacttgtacctagatatgaatggaattata
catcagtgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggtgttgtttcgaattattaaacctaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcaatagaaaaaggagaa
actcttcctaccgaggccagatttgattctaactgtattacaccagggacggaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttctacagacaagtcg
tggcaaggagttaccatctacttctcaggccatgagactcccggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttctctcttttaagagaagaggttcggtttggtggcaagaagacacaaagggtatgtgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagaatatatagactat
gagttttcagtattaaaagacaagattgcatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcgttgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggagcacttcagtgaagtttttgtggacctcaagtgg
tttgaaagcaaagtgggtaacaagtacctcaatgaagcagcaggtgtcgcagcagaagaa
gccaagagctacaaggaaaagagaaaatcaaaggaccaggaaaactccatatgttgggct
gctttagacacaaatggagaagaagtggtagcttctaaggataatgtagaagatgaaact
gaagatgatgacctatttgaaacagagtttagacaatataaaagaacgtattacatgacg
aagatgggagtggatgtagtgtctgatgactttctggctgatcaagctgcatgttatgtt
caagcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tacccctaccattacgcgcctttcctatctgatatccgcaacatcagcgcactcagcatc
cattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccggca
gctagcaaaaatttacttcctacatgctatcagcatttgatgaccagtgaagactcgcca
attatagaatattacccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtactaataccattcattgatgagaagcgattgttggaagccatggagacg
tgtaaccactccctcaaaaaagaagagaggaagagaaaccgacatagtgagtgcctaatg
tgctggtatgatagagacacagagttcacctacccctctccatggccagaaaagttccct
gccatagaacgatgttgcacaaggtataaaatgatatcattagatgcttggcgtgtagac
ataaacaagaacaaaataacgaggattgaccagaaggcattatatttctgtggatttcct
actctgagacacatcaaacacaaattttttttgaagaaaagtggggttcaagtattccag
caaagcagtcgtggagaaaacatgatgttagaaatcttagtgaatgcagaatcagatgac
cttagtatagaaaatgtagcttcctcagtgcttggaaagtctgtctttgttaactggcct
catcttgaagaagctagagttgttggtgtatcagatggagacactaagttttacttggaa
gaacctccaggaacacagaagctttatttgggcagaactgccccgccatctaaagtagtc
catcttggagacaaagaacaatctaactggacaaaagaagtacaaggaatttcagaattc
tatctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagtta
cttaccggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacagtgg
tcaaaacaagttcttccttttgtttatcaaactattgtcaaggacatccgagcttttgac
tcccgtttctccaatatcagaacattggatgacttatttcctcctagaagtatggtcttt
atgctgggaaccccctattatggctgcactggagaagttcaggagtcaggggatgtgatt
acagaaggtaggattcgtgtggttttcagtattccatgtgaacccaatcttgatgctcta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaac
aaaaaaaatgaggaggtacctggatatactaagaaagttggaagtgaatggatgtattca
tctgcagcagaacaacttcttgccgagtacttagagagagctccagaattattttgttat
atagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaagac
gagaatggtgctgagaaagttcaagaaattattacatggctaaagggacatcctgtcagt
acgttgtctcgttcttcttgtgatttacaaattctggatgcagctattgtcgagaaaatc
gaagaagaagttgaaaagtgcaagcaaagaaagaataataagaaggtgcgagtgacagta
aagccccatttgctgtatagacctttagaacagcagcatggcgtcattcctgatcgggat
gcagaattccgtctctttgaccgtgttgtaaatgtgagagagaacttttcagttccagtt
ggccttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactattt
gaagtattatttgatgaagaatttcctggaggcttaacaataaggtgttcacctggtaga
ggttatcgactgccgacaagtgccttggtgaacctttctcatgggagtcgctctgaaact
ggaaatcagaagttgacggccgttgtgaaaccacaaccagctgtgaatcagtacagctca
gcttcctcagtttcctctgggcatttgggaggcctgaaccattcccctcaatcacttttt
gttcctactcaagtacctactaaagatgatgatgagttttgcagcatttggcagtcctta
cagggatccggaaaggttcagcactttcagccaagtctacaagagaagggtgcagttcta
cctcaagaaatcagtcaagtaactcagcatcataaatctggctttaatgacaacagtgtt
aaatgtcagcaaagaaaacatgagcctcacagaaaatttaaagaagagtgtaaaagtcct
aaaacagagagtcggtcacaaaaaatgtcacataagcagcctacccctggaattgagaag
tttttagcatctttgaatatctccaaagaaagtggagtgcagtcatcgcattttgaagag
cctccgagtgaagagcatttgtcaccacagtcatttgctatgaagggaacacggatgctt
aaagaaattctaaaaattgatggctttgacactgtggaccataagaatgaaataaaacag
tttggtaatgaaatttcctctaatagaagagatgaatatggatctgcctcacagcctaaa
caaaataagaaattaacatcttgtatgaacaaggctcacagtgctagtgagtaccgtagt
gctcagtctatggacaatgtgtgttggcctgttcccagccacatccctcctgtgtccaca
ccagtaactgaactttctcgaatttgttctcttgttggaatgccacaaccagatttctcc
tttcttagaacaccacagacgatgacagtttgccaggtaaaactatccaatggcttattg
gtacatgggccacagtgccattctgaaaatgaggccaaggaaaaagctgcactttttgct
ttacaacaattgggttccttaggagttaatttccctttgcctccaccactaattccaaat
tatcctcctgctgtaccacctgggaccattcctccagtttttccccaaccaactggctgg
gatcactacggaagcaacttagctctgggggcagctaatataatgcctccgtcgtctcat
ctctttggctcgatgccgtggggaccgccagtgccagcgcctggaaagcctttccagcac
acttcgtatcccggggccatgcccatggctgggggaatgcgaggtggtgcgcacaatcag
ttcatccctctacaggttactaaaaaaaggattgcaaacaaaaagaactttgagaataag
gaggcccagagttctcaagccaccccacttcagactagccaaccagggtcttccagtgtc
accaaagtgattccgcaggggagttcatcagcttccttaaagtcctctcagattactcaa
cccgcaccttcttttcaagttgaagctgccccccagggccatagtgtgtctcaccataag
tcaacaccaagctcttcttcaagaagaaaatcaagaaaattggctgtcaattttggcgtt
tctaaaccttctgaataa
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