Equus asinus (ass): 106841341
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Entry
106841341 CDS
T04645
Symbol
VPS39
Name
(RefSeq) LOW QUALITY PROTEIN: vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
eai
Equus asinus (ass)
Pathway
eai04140
Autophagy - animal
eai04148
Efferocytosis
eai05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106841341 (VPS39)
04148 Efferocytosis
106841341 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106841341 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
eai04131
]
106841341 (VPS39)
Membrane trafficking [BR:
eai04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
106841341 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
WD40_like
Lgl_C
KCTD11_21_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
106841341
NCBI-ProteinID:
XP_014712805
LinkDB
All DBs
Position
2:191350243..191391255
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHVIHVW
EETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEYRRKLLVFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTRMAEEYCHKHYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELQEPQANLQAALQVLELHHSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgaaccggtgccgatcttagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggcttctcgttggaaccaaacaaggacatcttcttctctat
aggattcggaaggatgttggttgcaacaggtttgaagtgacactagagaaatccaataag
aacttctccaaaaagattcagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataatatttatgtccatgacctattgacatttcaacaaatcactacggtt
tcaaaggcaaaaggagcatcactgttcacatgtgacctccagcacacagagactggtgag
gaggtgttgcggatgtgtgtggctgtgaaaaagaagctgcagctctatttctggaaggac
agggaatttcatgaattgcagggggactttagtgtaccagatgtgcccaagtccatggca
tggtgtgaaaattctatctgtgtgggtttcaagagagactactacctaataagggtggat
ggaaaggggtccatcaaagagctcttcccaacaggaaaacagctggaacccttagttgca
cctctggcagatggaaaagtggctgtgggtcaggatgatctcaccgtggtgctcaatgag
gaggggatctgcacacagaaatgtgctctcaactggacagacataccggtggccatggag
caccagcctccctacatcattgcagtgttgcctcgatatgtggagatccgaacatttgag
ccgaggctcctggtccagagcattgaattgcaaaggccccgtttcattacctcgggagga
tcaaacattatctatgtggccagcaatcattttgtctggagactcattcctgtccctatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctacagctcgca
gaaatgaaagatgattctgacagtgaaaagcagcaacagatccatcatatcaagaacttg
tatgccttcaacctcttctgccagaagcgttttgatgagtccatgcaggtctttgctaag
cttggcacagatcctacccatgtgatgggcctgtacccggacctgctgcccacagactat
aggaagcagctgcagtaccctaacccgctgccggtgctctctggggctgagctggagaag
gctcacttagctctgattgactacctgacacagaaacgaagccaactggtaaagaagctg
aatgactctgatcaccagtcgagtacctccccgctcatggagggcactcccaccatcaaa
tccaagaagaagttgttacaaatcatcgacaccaccctgctcaagtgctacctccatacg
aacgtggccctggtggcccccttactgcgcctggagaacaatcactgccacatcgaagag
agcgagcacgtgctgaagaaggcccacaagtacagtgaactgataatcctgtacgagaag
aaggggctccacgagaaagctctgcaggtgctggtggaccagtccaagaaagcgaactcc
cctctgaaaggccatgagaggaccgtgcagtacctgcaacacctgggcaccgaaaacctg
catttgattttttcctactcagtgtgggtgctgagagacttcccagaggatggcctaaag
atatttacggaagacctcccggaggtggagtctctgccacgagaccgagtgctcggcttc
ctagtagagaactttaagggtctggctattccttatctggaacatgtcatccacgtttgg
gaggagacaggctctcggttccacaactgcctgatccagctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttcccggcaggcaaaactccagtccctgccgga
gaggaagagggtgagctgggagaataccgacggaagcttcttgtgttcttggaaatttcc
agctactatgatccaggccggctcatctgtgactttccttttgatggcctcttggaagaa
cgtgctctcctgctgggccgcatggggaaacacgagcaagctctcttcatctacgtccac
gtcctgaaggatacaaggatggctgaggaatactgccacaagcattatgaccaaaacaaa
gacggcaacaaagatgtgtatctgtccttgctgcggatgtacctctcgccacccagcgta
cactgcctggggccaatcaagctggaactgcaggagccacaggccaacctccaggctgcc
cttcaggtcctcgagctgcaccatagcaaactggacaccaccaaggccatcaaccttctg
ccagcaaacactcagattaacgatatacgcatctttctggaaaaggtcttggaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaaccttctccatgcagaattcctgagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacggaggagaaggtg
tgcatggtgtgtaagaagaagattgggaacagtgcatttgcaagataccccaacggagtg
gtcgtgcactacttctgttccaaagaggtaaacccagctgacacctga
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