Equus asinus (ass): 106842041
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Entry
106842041 CDS
T04645
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
eai
Equus asinus (ass)
Pathway
eai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106842041 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106842041 (PNLDC1)
Enzymes [BR:
eai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106842041 (PNLDC1)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106842041 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
106842041
NCBI-ProteinID:
XP_044617301
UniProt:
A0A9L0JC34
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All DBs
Position
28:18199516..18218318
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AA seq
531 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWSVHSSPDKDQIKVVIDEVTRWLDLAAEGDW
MTLPGIAGFQAFEVQLVLRQALPDIWTVLRDQGVVVKKVSKQHRWYLENTSGDRESCWKE
KILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEQFKLNVHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPSKNSGPVIIHASKCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWRVHGASSIPELSFPLYLDVLAPYVNQVNLIRAGVPKIN
FSGPDYPSIRPPILILRVRRWPGLSEQQVYREFQNLCKFDVRRLTRSQFLLLTNKFKDAR
TILREYRGHPTLQVSLYRHWRHSPSVNCVLQVCGVVTTWALLAFLLGRPGP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgacgagttcgagcagagcctgccgctgctgcaggagcttgtcctg
ggcgcggacttcgtgggtctggacatagagttcaccggccttcgttccaacctgtctcga
ccccagcagatcagtctttttgacttgccatccgagtggtatctaaagacgcgccagagc
gttcagcagttcaccatctgtcagatcggattgtctgtcttctccagtattgaaggagag
tcaaacaagtatgtagcccattcatgtaacttctttctcttccctacaacgtttgggatt
ttggattcggaattctctttccaggcttccagtgttcagtttttgaatcagtacggcttc
gactacaacaagtttctcaaaaacggaatcccgtatatgaatgaagaacaggagaagaaa
attaaacacaacatcctcactgggaactggagcgttcacagttctccggataaagaccaa
atcaaggtggtgattgatgaggtgacgcggtggctggacctggcagccgaaggtgactgg
atgactctccctggtattgctggcttccaggcctttgaggtccagctggtgctgaggcag
gccctccccgacatctggacggtgctcagagaccaaggggtggtagtgaagaaagtgagt
aaacagcatcgctggtaccttgagaacacgtctggggatcgagagagctgttggaaggag
aagattcttctctctgccaggggtttctctgtgtttttccagatgctggtgaaagcccag
aagcccttagtgggacataatatgatgatggatctgctgcatctgcatgagaagttcttc
agacccctcccagaaagctacgagcagtttaagctgaacgtccacaacctgtttcctgtt
ctcattgataccaagaacgtgacgaaggatatctggaaggaactgaatttcccaagggtt
tcaaatctctccgaagtgtatgaagtcctcaacagtgacttgaatcccagcaagaattct
gggcctgtgattattcatgcaagcaagtgtgaaaaatacgttgagaccaagtacccccac
gaagcagcatacgatgccttcctctgcggctcagttctcttgaaagtggcacacttgctc
ctgtggagggtgcatggtgccagttccatcccggagctctccttccctctgtaccttgat
gtgctggccccttatgtgaaccaggtgaatcttatccgagctggcgtccctaagattaat
ttttctggtcccgattacccgagtatccgccctcccatcctcatcctccgtgtcaggagg
tggcctgggctcagcgagcagcaagtctaccgggagtttcagaatctctgcaaattcgac
gtcaggcggctcacgcggagccagttcctgctgctgaccaacaagtttaaggatgctcgc
accatcttgagggagtaccggggccaccctaccctgcaggtctccctctaccggcactgg
agacactccccgagcgtcaactgtgtgttacaagtctgtggcgtggtcaccacctgggcc
cttctcgcgttcctcctcgggaggcctggcccctga
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