Equus asinus (ass): 106843360
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Entry
106843360 CDS
T04645
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
eai
Equus asinus (ass)
Pathway
eai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106843360 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106843360 (MTREX)
03041 Spliceosome [BR:
eai03041
]
106843360 (MTREX)
03009 Ribosome biogenesis [BR:
eai03009
]
106843360 (MTREX)
03016 Transfer RNA biogenesis [BR:
eai03016
]
106843360 (MTREX)
Enzymes [BR:
eai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106843360 (MTREX)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106843360 (MTREX)
Spliceosome [BR:
eai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106843360 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
106843360 (MTREX)
Ribosome biogenesis [BR:
eai03009
]
Eukaryotic type
Pre-60S particles
Helicases
106843360 (MTREX)
Transfer RNA biogenesis [BR:
eai03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106843360 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
106843360
NCBI-ProteinID:
XP_014715826
LinkDB
All DBs
Position
1:103709058..103824207
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPSGSAEKAGKRFDEKSQSESTNIG
KTKRDADFDGTDEPIFGKKPRVEESITEDVSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNSQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKSSEQQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPMDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAMDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgttcggggatgagctcttcagcgtgttcgaggacgactcgaccactgcg
cccggaactaaaaaagacaaggaaaaggagaaggggaaatggaaggggccgtcagggtct
gcggaaaaggccgggaaacgttttgatgaaaaatcacaatcagagtcaacaaatattggg
aaaaccaagagagatgcagatttcgacggcacagatgaacccatttttggaaagaagccc
agggtagaagagtcaataactgaagacgtaagtttggcagatttgatgcccagagttaaa
gtacaatcagttgaaactgttgaaggttgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataacagtcagtctgttttagtgtct
gcacatacatcagcgggaaaaactgtatgtgctgagtatgccattgcattagccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctttgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtggtatgggaagaaactattattttgcttcctgataatgttcactatgtc
tttctttcggctactattccaaatgctcgacagtttgctgaatggatttgccatctacat
aaacagccttgtcatgtcatctatacagattatcggcctactccattgcaacactacatt
tttccagcagggggagatggcctgcaccttgtggttgatgaaaatggtgactttagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaagggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggagagaaattttcaacctgtaattatattcagttttagtaagaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttgtctgatgaagataagaagctccctcag
gttgaacatgtacttcctcttttgaagcgtgggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttccgaaggattgataaaggccttattt
gccacagagacttttgccatgggaattaacatgccagctagaactgttttatttacaaat
gcccgaaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tccggtcgtgctggaaggaggggaatggatgatagagggattgtaattcttatggtggat
gaaaagatgagcccaacgattggaaaacaactgcttaagggatcagctgatcctctaaat
agtgcttttcatttgacctacaacatggttttgaacttactacgtgtagaagaaattaat
ccagagtacatgttggaaaaatccttctaccagtttcagcactatagagccattccagga
gtagtagaaaaggtaaagagctcagaacaacagtataataaaatagtaataccaaatgaa
gaaagtgttgtcatctattacaagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggtgtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaagagagcctgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgttccagttttggtgcatctcctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgaccaatggacaatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgatatgggcattcaagatcaagggctgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatcccaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatggatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgaccta
tctgcagaacaggcaacggcactcctaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggaaacttatctaagc
tcattcaaacctcacttgatggatgtagtatatacctgggcaactggagctacatttgct
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgtctg
gaagaactacttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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