Equus asinus (ass): 106843770
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Entry
106843770 CDS
T04645
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
eai
Equus asinus (ass)
Pathway
eai03015
mRNA surveillance pathway
eai04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106843770 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
106843770 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eai03021
]
106843770 (SYMPK)
03019 Messenger RNA biogenesis [BR:
eai03019
]
106843770 (SYMPK)
Transcription machinery [BR:
eai03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106843770 (SYMPK)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106843770 (SYMPK)
U7-dependent histone pre-mRNA processing factors
106843770 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
INTS7_N
Motif
Other DBs
NCBI-GeneID:
106843770
NCBI-ProteinID:
XP_044615623
LinkDB
All DBs
Position
26:complement(16433342..16468608)
Genome browser
AA seq
1270 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSALKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGTLDKYEDCLIRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMAILEASGKQEPEAKEAPTGPLEEDDLEPLALAPAPAPRPPQDLIG
LRLAQEKALKRQLEEEQKLKPGGAPSSSSSSSARPGPPQPEEAIDFREEGPECETPAIFI
SMDDDSGLTEAALLDSSLEGPLPKEAAASGLTAKEERSPQTLTPAGEDTVKTPSPAAAEE
AGESENKGNS
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagtggggacagcgtcactcgccggagcgtggcatcacagtttttcaca
caagaggaggggccaggcatcgatggcatgaccacctcagagagagtggtggatctcctc
aaccaggcagcgctgatcaccaacgattcaaagatcacagtgctcaaacaggtccaggaa
ctgatcatcaacaaagatcccacactcttggacaacttcctggatgagatcatcgctttc
caagcagacaagtcgattgaagtgcgcaaatttgtcatcggcttcatcgaggaggcatgc
aagcgagacattgagttactgctgaaactgatcgcgaacctcaacatgctcttgagggac
gagaacgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtcacgggtcatcagtgagctccaggaggcctgctgggacatg
gtgtctgccatggctggggacatcatcctgctgttggactctgacaatgacggcatccgc
acccatgccatcaagtttgtggagggcctcattgtcaccctgtcaccccgcatggctgac
tcggaggtgccccgacgccaggagcatgacatcagcctggaccgcatccctcgcgaccat
ccctacatccagtacaatgtgctgtgggaagagggcaaggcggccttggagcagctgctc
aagttcatggtgcaccccgccatctcctccatcaacctgaccacggccctcggctccctc
gcaaacattgcccgccagaggcccatgttcatgtctgaggtgatccaggcctatgagacc
ctgcacgccaacctgcccccgacgctggccaagtctcaggtgagcagtgtgcgcaagaac
ctcaagttgcacctgttgagtgtgctgaagcacccggcctccctggagtttcaggcccag
atcaccaccctgctggtggacctgggcacgcctcaggctgagatcgcccgcaacatgccc
agcggcaaggatgcccgcaagcggccccgagatgactcagattctgcactcaagaagatg
aagctggagcccaacctgggggaagatgacgaggacaaggacttggaaccaggcccatcg
gggacctcgaaggcctcagcccagatctcaggccagtcggacacagacatcactgctgag
ttcctacagcctctgctgacgcctgacaacgtggccaatctggtcctcattagcatggtg
tacctgcccgaggccatgcccgcctccttccaagccatctataccccagtggagtccgca
ggcactgaagcccagatcaagcacctggctcggctcatggccacccagatgacagctgca
ggactggggccaggcgtggagcagacgaaacagtgcaaggaggagcccaaggaggagaag
gtggtgaagccagagagcgtcctgatcaagcggcgcctgtcagcccagggccaggccatt
tcggtggtgggctccctgagctccatgtccacgctggaggaggaggcgccccaggccaag
aggaggccagaacctatcatccctgtcacacagccccggctggcaggcgccggtgggcgc
aagaaaatcttccgtctgagcgatgtgctgaagccactgactgatgcccaggttgaggcc
atgaagctgggcgctgtgaagcggatcttgcgggctgagaaggctgtggcctgcagcggg
gcggcccaggtgcgcataaagatcctggccagcctggtgacacagttcgactcgggcctg
aaagccgaggtcctgtccttcatcctggaggacgtgcgggcccgcctggacctggccttc
gcctggctctaccaggagtacaatgcctacctggcagctggtgcctcaggcaccctggac
aagtacgaggactgcctcatccgcctgctctccggcctgcaggagaagccagaccagaag
gatgggatcttcaccaaggttgtgctggaggcgccgctgatcaccgagagtgccctggag
gtgattcgcaagtactgtgaggatgagagtcgcacctacctgggcatgtccactctccga
gacctgatcttcaagcgcccgtcccgccagttccagtacctgcatgtcctgctcgacctc
agctcccatgagaaggacaaggtgcgttcccaggccctgctattcatcaagcgcatgtac
gagaaggaacagctgcgagagtacgtggagaaatttgccctcaactacctgcagctcttg
gtccaccccaacccgccgtctgtgctgtttggagctgacaaggacacagaggtggcagcg
ccttggaccgaggagacagtcaagcagtgtctgtacctctacctggccctcctgcctcag
aaccacaagctgatccatgagctggcggccgtgtacactgaggccatcgccgacatcaag
cggacagtgctaagggtcatcgaacagccgatccgaggaatgggcatgaactcgccagag
ctgctcctgctggtggaaaattgtcccaagggggcagagacgctggtcacacggtgtctg
cacagcctcacagacaaagtcccaccctccccggagctggtgaagcgggtccgggatctc
taccacaagcgactgccagacgtccgcttcctcatccctgtgctcaatgggctggagaag
aaagaagtgatccaggccctgccaaagctcatcaagctcaaccccatcgtggtgaaagag
gtcttcaaccgcctgctgggcacgcagcacggcgaagggaactcggccctgtcccccctg
aaccccggagagcttctgatcgcattacacaacatcgactcagtgaagtgtgacatgaag
tctatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacatcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagtcccctgcccatgctgctcatgagg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccgcctcatcatgaagcaggtgtggaagtaccccaaggtgtgggagggcttcatcaag
tgctgtcagcgcaccaagccccagagcttccaggtcatcctgcagctgccaccccagcag
ctgggcgccgtctttgacaagtgccccgagctccgggagcccctgctggcccacgtccgc
tccttcaccccccaccagcaagcacacatccccaactccatcatggccatcctggaggcc
agtggcaagcaggagccagaggccaaggaagcacccactgggcccctagaagaggacgac
ctggagcccctggccctggccccagccccggccccccggccccctcaggacctcatcggc
ctgcgcctggcccaggagaaggccttaaagcggcagctggaggaggaacagaagctgaag
ccggggggagccccctcctcgtcctcctcttcctcagcccggcccggccctccccagccg
gaggaagccatagatttccgggaggaggggcccgagtgtgagaccccggccatcttcatc
agcatggatgacgactcggggctgaccgaggccgcactgctggactctagtcttgagggg
cccctacccaaggaggcagcagcgagcgggctgaccgccaaggaggagcggagcccccag
accctcacccctgccggagaagacaccgtgaagacccccagccccgccgccgcagaggaa
gccggggaatccgagaacaaggggaacagctga
DBGET
integrated database retrieval system
