Equus asinus (ass): 106844355
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Entry
106844355 CDS
T04645
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
eai
Equus asinus (ass)
Pathway
eai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106844355 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106844355 (PATL1)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106844355 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
106844355 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
106844355
NCBI-ProteinID:
XP_044606432
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Position
17:complement(38316583..38345879)
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AA seq
817 aa
AA seq
DB search
MSGKLGDRKNAIFTRSHNEAILLIGKSLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGS
GAVDDDWQEAHERLAELEEKLPAAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENEL
EDPAIMTAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLLAQEMPAVSVLEYALPQRTP
QAPEDDRDLSERALPRRSTSPVIGSPPVRAVPIGTPPKQMAVPSFNQQPVQSCSIDFPPP
ETSSCKGRPIWKILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVP
PVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAAMNPKLLQGRVGQMLPPAPG
FRAFFSAPPPATPPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNR
NQHRNLNGAGDRGSHRSSHHDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYY
QNYFEKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNP
RKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPA
LMEERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADIL
MTTARSLPFLIKKDAQDEVLPCLLSPFSLLVYHLPSVTVTSLLQQLMNLPQSAAAPAPSN
PHLTAVLQNKFGLSLLLVVLSRGEDLQSSDPAAESTQNNQWTEVMFTATQELLRIPQAAL
AKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaaattgggggatagaaaaaatgccatctttacaagaagtcataatgaagct
attctgttaattgggaagtctttggaggattgtcctctggatgaagatgaagatgcattt
cagggcctgggagaggaagatgaagagattgatcaatttaatgatgatacatttgggtca
ggtgcagttgatgatgattggcaggaagcacatgagcgcctggctgaactggaagagaag
ctcccagcggccgttaatgaacaaacaggcaatggagaaagggatgagatggacttgttg
ggtgaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaacta
gaagatccagctatcatgacggctgtgcagaccaggccagttttgcaaccccaaccagga
agtctcaattccagcatctgggatggatctgaagttctgaggcgaatccgaggaccgctg
cttgctcaggaaatgcctgcagtgtctgtattagaatatgccttgcctcagaggacccca
caggcccccgaagacgatcgggacctttctgagcgtgcattaccacggcggtcaacgtca
cctgtcattgggagtcctcctgttagagctgtccctataggcaccccacccaagcagatg
gctgtacccagcttcaaccagcagcctgtgcagtcctgttccatagactttcctccacct
gaaaccagcagctgcaaaggaaggccaatttggaagattctgtgcccgaaacctgtccat
gttcggcccccaatgccaccgcgttatcctgctccctatggtgagaggatgtctccaaac
cagctctgcagtgtcccgaactcttccctactgggtcaccctttccctcctagtgttcct
cctgttctcagccccctccagagagcacagcttcttggaggagcacagctgcagcctgga
cggatgtctcccagccagtttgcacgggtccctggatttgttggcagtccacttgctgct
gccatgaatcccaaattgctgcaagggcgagttgggcagatgcttccccccgcaccaggc
ttccgtgccttctttagtgctccaccccccgctaccccacctcctccacagcagcacccc
cctggcccaggacctcacctgcaaaacctaagatctcaggccccaatgtttagaccagac
acaactcaccttcatccacagcaccgtcgactcttgcatcagagacaacagcagaacaga
aatcagcatcggaacctcaatggtgcgggagatagaggaagtcaccggagcagtcatcac
gatcatctccggaaggatccatatgccaatctcatgttgcagcgagaaaaggattgggtc
tctaaaatccagatgatgcagctgcaaagcactgatccctacctggatgatttttattat
cagaattactttgaaaaactggagaaactgtcagctgctgaagaagtgcaaggtgatggc
cctaaaaaggagcgcaccaagctcattacccctcaggtggccaaactggagcacacctat
aagccagtgcagtttgagggctctttgggaaagctgactgtctccagtgtgaataatccc
cgaaaaatgattgatgctgttgtgacatctcggagtgaagatgatgagacaaaggaaaaa
caggttcgggacaagagacgaaaaacccttgtcataattgagaaaacctatagtttactc
ctggatgtggaggattatgaaaggcggtatctcctaagtctagaagaagagcgaccagcc
ctgatggaagaaagaaaacacaaaatttgcagcatgtatgacaacttaagggggaaattg
cccggtcaagagaggccaagtgatgaccactttgtacagatcatgtgtatccgaaaaggg
aagagaatggttgcccgcattcttcctttcctctccacagagcaagcagctgacattctc
atgacaacagctaggagcctccctttcctcatcaagaaggatgcacaagatgaggtgctg
ccatgcttactgagtcccttctctctcctcgtctatcatcttccatcagtgactgtcacc
agccttctgcaacagctgatgaacctacctcagagcgcagctgcaccagcaccctctaat
ccccacctcactgctgtgctccagaacaagtttggcctgtcactgctcctcgtcgtcctg
agccgtggggaagacctacagagttcagaccctgctgcagaatcaacgcaaaacaaccag
tggacggaggtgatgttcacagcaacccaagaacttctgcgcatcccccaagcagccctg
gccaagccaatctctatacccacaaacctagtatccctcttttctcgctatgttgaccga
cagaaactgaacttgctggaaacaaaactgcagctagttcaggggatacgataa
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