Equus asinus (ass): 106844516
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Entry
106844516 CDS
T04645
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
eai
Equus asinus (ass)
Pathway
eai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106844516 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eai03019
]
106844516 (XAB2)
03041 Spliceosome [BR:
eai03041
]
106844516 (XAB2)
Messenger RNA biogenesis [BR:
eai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106844516 (XAB2)
Spliceosome [BR:
eai03041
]
Complex B
Other components
Prp19-related factors
106844516 (XAB2)
Complex C
106844516 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
106844516
NCBI-ProteinID:
XP_044609080
UniProt:
A0A8C4PPF8
LinkDB
All DBs
Position
20:complement(5434337..5443523)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRVWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLIARRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVSFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDASEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKHAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKILFVRSDASREELAELAQQANPEEIELGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactctcgcggcccgagcggccggaccttgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctccgtcaaatgctggctgcgc
tacatcgaattcaaacagggtgccccaaagcccaggctcaatcagctgtatgagcgggcg
ctgaagctgctgccctgcagctacaaactctggtaccgatacctgaaggcacgccgggcg
caggtgaaacatcgctgtgtgaccgaccccgcctacgaagatgtcaacaactgccacgag
agggcttttgtgttcatgcacaagatgccacgtctgtggctagattattgccagttcctg
atggaccagggccgcgtcacgcacacccgccgcactttcgaccgtgccctccgggcgctg
cccatcacccagcactcccgtgtttggcccctgtacctgcgcttcctgcgctcgcacccg
ctccctgagaccgctgtgcggggctaccggcgcttcctcaagctgagccctgagagcgca
gaggagtacatcgagtaccttaagtcgagtgaccggctggacgaggccgcgcagcgcctg
gccaccgtggtgaatgacgagcgctttgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctctgcgacctcatctcccagaacccggacaaggtgcagtcgctcaacgtg
gacgccatcatccgcgggggcctcacccgcttcaccgaccagctgggcaagctgtggtgc
tcactggctgactactacatccgcagtggccactttgagaaggctcgggacgtgtacgag
gaggccatccggaccgtgatgacggtgcgggacttcacccaggtgttcgacagctacgcc
cagtttgaggagagcatgattgccgccaagatggagacggcctcggagctggggcgggag
gaggaagacgacgtggacctggagctgcgcctggctcgcttcgagcagctcatcgcccgg
cggcccctgctcctcaacagcgtcttgctgcgccagaacccgcaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgccctcgggagatcatcaacacgtacacggag
gccgtgcagacggtggaccccttcaaggctacaggcaagccccacacgctgtgggttgca
tttgccaagttttacgaggacaacgggcagctggacgatgcccgtgtcattctggagaag
gccaccaaagtgagcttcaagcaggtggatgacctggcgagcgtgtggtgcgagtgtggc
gagctggaactccgccacgagaactatgaccaggctttgcggctgctgcggaaggcgacg
gcgttgcccgcccgccgggccgagtacttcgatgcctcggagcccgtgcagaaccgcgtg
tacaagtcgctgaaggtgtggtcgatgctcgctgacctggaggagagcctcggcaccttc
cagtccaccaaggccgtgtatgaccgcatcctggacctgcgcatcgccactccccagatc
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagctttaaggcg
tacgagcgcggcatctcgctgttcaagtggcccaacgtgtccgacatctggagcacctac
ctgaccaagttcatcgcccgctacgggggccgcaagctggagcgggcgcgggacctcttt
gaacaggcgctggatggctgccctcccaaacacgccaagacgctctacctgctgtacgcg
cagctggaggaggagtggggcctggcgcggcacgccatggcggtgtacgagcgcgccacc
agggccgtggagcccgcccagcagtacgacatgttcaacatctacatcaagcgggccgcc
gagatctatggggtcacccacacgcgcggcatctaccagaaggccattgaggtgctgtcg
gacgagcacgcgcgggagatgtgcctgcggtttgcggacatggagtgcaagcttggggag
atcgaccgcgcacgggccatctacagcttctgctcccagatctgcgacccccggacgact
ggggctttctggcaaacgtggaaggactttgaggtccgacatggcaacgaggacaccatc
cgggagatgctgcggatccgccgcagcgtacaggccacgtacaacacgcaggtcaacttc
atggcctcgcagatgctcaaggtgtcgggcagcgccacaggcactgtgtctgacctcgcc
cctgggcagagcggcatggatgacatgaaactgctggagcagagggcggagcagctggcg
gccgaggcggagcgggatcagcccccgcgggcccagagcaagatcctgttcgtgaggagc
gacgcctcccgggaggagctggccgagctggcgcagcaagccaaccccgaggagatcgag
ctaggcgaggacgaggacgaggatgagatggacctggagcccaacgaggttcggctggag
cagcagagcgtgccggctgccgtcttcgggagcctgaaggaagactga
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