Equus asinus (ass): 106846146
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Entry
106846146 CDS
T04645
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
eai
Equus asinus (ass)
Pathway
eai03440
Homologous recombination
eai03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
eai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106846146 (PALB2)
03460 Fanconi anemia pathway
106846146 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eai03400
]
106846146 (PALB2)
DNA repair and recombination proteins [BR:
eai03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
106846146 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
106846146 (PALB2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Arm-DNA-bind_4
Motif
Other DBs
NCBI-GeneID:
106846146
NCBI-ProteinID:
XP_014720217
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All DBs
Position
14:23637389..23660623
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AA seq
1185 aa
AA seq
DB search
MEEPLGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKVKNSLKKTVEGQDDLLQ
EEVSPQLNRPEPKNKASPCYTLQINTHLNEDTGGKTSVTLDAEPGHGPVEGLCIQRTGDI
QERFPYRVHGPDGEKRQSKLPGRRTKQQKRTFISQERESFFDTDSLLLSGKRLKEQEGIN
RGNPRTLVTEKRIYLLSPKSDGSDLPAAVIETNVGSVLIPNAKPQRGVDELFRGNDFPRA
TTLPVHTLLDSSSGQHLEHKPSEDNCELIAHSLENISPVSPVNLEAQDKKMTVLTDNPEV
NKAVSASGQLPRSPNLEADNSCSLNELTSDSLSADENQNFKEQNHAERSLKSPNNTLDGK
NESIQENEVLSQPNSLSLEVISPDSTEDQTDSCTVLEGLLFPAEYYVRTTRRMSSCQRKV
ALEAVIQSHLGVRKKGFKNKKEATKNLNSSSEETKQSEIRMSDTCTGRPNSRSPAQKLLS
LTEVSSPTGPTPDDFSRKAVTQPSGRRPGGKRKSTCTPELDRCELLLPTSGTCGVNRSKE
GVTLRKDENEKATIHGKESHCQMKKNEKMKKEESLSSRNSAYLVLEDDAFRAPFHKNEML
SLKQLSSLLEITDFELPDKDFGPLKLEKLHFCSERAVEPFESKIYGERPLREGNCIVLEE
LTPEQINTEMEDLEEELISVPGKACPKTPSLKSQPQGLSSSILLFTPLNTVRPDDNDAPA
ADACSPTFPILGVTPAVGSRAHCEEVCAEFVGRTCSPPRLSHSHTPVSLASDQKQCNSWA
SPPELDGSLHVSGRKGKPSCDCDSGPQATPLPNESFTFQENQLHGNTCLESWKLSVEQTE
IADVPACDRVNPGNLQLVSKLKNTSGSCSVDVSAMWWEIAGLKEPCIITACEYVVSLWKP
LDTWQWEKIYSWHFTEVPVLQIVLVPDVCNLVCVALGNLEIREIRALLCSSDGESEKQLL
LSSGNIKAVLGLTQRRLVTSSGTLCDQQVEIMTFAEDGGSTEKQFLMPPEETILTFAEVQ
GMQDALLGTTIMNNIVIWNLRTGQLLRKMHIGNSYQASVCHKAYSEMGLLFVVLSHPCAK
ESEALGSPVFQLIVINPKTTLSMGVMLYCLPQGQAGRFLEGDVKDSFAAAVLTSGTIAIW
DLLLGHCTALLPPLSDQNWSFVKWSGTDSHLLAGQKDGNIFIYRY
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctctcgggaagcccctcagctgtgaggagaaggaaaagttgaaggaaaaa
ttagctttcttgaaaagggaatacagcaagaccttggcccgccttcagcgtgcccaaaga
gctgagaaggttaagaattctcttaagaaaacagtggaaggacaagatgacttgctccag
gaagaagtttcaccacagctaaaccgcccagaacctaaaaataaagcatctccttgttac
acgttacaaatcaacacccatctcaatgaagacactggaggaaagacatctgtcacgctt
gatgcggagccaggacatggcccagtggaaggattatgcatacaaagaacaggtgatatc
caagaacgttttccctacagggtccatggccctgatggtgagaaaaggcagagtaagctg
ccagggagaagaactaagcagcagaagagaacatttatttcacaggaaagagagtctttc
tttgacactgattcccttctactctctggaaaaagactaaaggaacaggaaggaatcaat
agaggaaatcctaggacactcgtaactgaaaaaagaatttaccttctaagtcctaagtct
gacggttcagatcttccagcagcagttatagaaactaatgtagggagtgtattaattcca
aatgccaaaccacaaagaggtgtcgatgagctcttcagaggaaatgacttccccagagcg
actacactgcctgtgcatactctgctagatagcagtagtggtcagcatctcgagcataag
ccttctgaagataactgtgaacttattgctcacagtttagaaaacattagccctgtttca
cctgtaaacttagaagcacaagacaaaaaaatgactgtccttacagataacccagaggta
aataaagctgtaagtgcaagcggccagctgcctagaagtcctaacttagaggcagataat
tcatgttctctaaatgaactcacttctgatagcttatcagcagatgaaaaccaaaacttc
aaagaacaaaatcacgcagagaggtctttaaaatctcccaataacactcttgatggtaaa
aatgaaagtattcaggaaaatgaggttctaagtcaacctaacagtctcagcctagaagta
atctcccctgattctacagaagatcaaacagattcttgcacagtgcttgaaggcctccta
tttcctgcagaatattatgtcagaaccacacgacgcatgtccagctgccagaggaaagta
gccctggaggctgtaattcagagtcatttgggtgtcagaaagaaggggtttaaaaataaa
aaggaagctactaaaaatttaaactcttccagtgaagagactaagcaaagtgaaattagg
atgtctgacacatgcacaggacgacccaactcgagaagtcctgctcagaaacttctctca
ttaaccgaagtcagctcccccactgggcccactccagatgacttttctaggaaggcggtt
acccagccatctggcagaagacccggaggaaaaagaaagtcaacctgcacccctgaatta
gatcgttgtgaactacttttgccaacttctggcacttgtggtgtcaataggtccaaggaa
ggagtcacgttgcgcaaagatgagaatgaaaaagcaactattcatggaaaagaaagtcat
tgtcaaatgaaaaaaaatgaaaaaatgaaaaaagaggagtccctttcttccaggaatagt
gcttatttggttttggaggatgatgctttccgtgctccatttcataagaatgaaatgcta
agtttaaagcaactatcgtctcttctcgaaatcactgactttgagttacctgataaagac
ttcggacctcttaaacttgaaaaattgcacttctgctcggaaagggcagttgagcctttt
gaatcaaaaatatatggggagaggcctcttagagaaggaaattgtattgttttggaggaa
ttgactcctgaacaaatcaatacagaaatggaggacttggaagaggaactgattagtgta
ccaggaaaagcatgccctaaaacgccgagcctaaaaagccagcctcagggcctttcttcg
tccatactgcttttcactcctttaaatacggttagaccagacgataatgacgcgccagca
gcagacgcgtgttcacccactttccccatcttaggcgttactccagctgttggctcccga
gcacactgtgaagaagtgtgtgcagagtttgttggacgaacttgctctccaccccggctt
tctcactcgcacaccccagtcagtcttgccagtgatcagaagcagtgcaacagttgggcc
agcccaccagaattagacggcagcctgcatgtgtcaggaaggaagggaaagccttcctgt
gactgtgattctggtccccaagcaacacctcttcccaatgagtcattcactttccaagaa
aatcagctgcatgggaatacatgtctggaatcgtggaaactttctgttgaacagacagaa
atagcagacgttcctgcctgtgacagggtaaacccaggcaacctacaattggtttcaaag
ttaaagaatacttcaggttcctgttctgtggatgtgagtgccatgtggtgggaaatagct
ggtttgaaagagccgtgtatcataactgcgtgtgaatatgtagtttctctttggaaacct
ctggatacttggcagtgggaaaaaatttattcctggcacttcacagaggttccagtatta
cagatagttctagtgcctgatgtttgtaatcttgtgtgtgtggctttgggaaatttggaa
atcagagaaatcagggcattactttgttcctctgatggtgaaagtgaaaagcaattactc
ctgagttctggaaatataaaagctgtgcttggcctgacacagagaaggctagtcactagc
agtgggaccctttgtgatcaacaagtagaaatcatgacctttgcagaagatggaggaagc
acagaaaaacagtttttgatgccccctgaagagactatactaacttttgctgaggttcaa
gggatgcaggacgctctgcttggtaccactataatgaacaacattgttatctggaattta
agaaccggtcagctcctgagaaagatgcacattggcaattcctaccaagcttcagtctgt
cacaaagcctattctgaaatggggctcctctttgttgttctgagtcatccttgtgccaaa
gagagtgaggcgctgggaagccctgtgtttcagctgattgtgattaacccgaagacgacc
ctgagtatgggtgtgatgctctactgtcttcctcaagggcaggctggaaggttcctggaa
ggtgatgtgaaagatagttttgcagcagcagtgttgacttctggaacaatcgccatttgg
gacttacttctaggtcattgcactgctctccttccacctctctctgaccaaaattggtct
tttgtgaaatggtcaggtacagattctcatttgctggctggacaaaaagatggaaatata
tttatataccgctactaa
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