Candidatus Electrothrix aestuarii: Q3M24_01115
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Entry
Q3M24_01115 CDS
T10293
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eaj Candidatus Electrothrix aestuarii
Pathway
eaj03020
RNA polymerase
Brite
Enzymes [BR:
eaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Q3M24_01115 (rpoC)
Transcription machinery [BR:
eaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Q3M24_01115 (rpoC)
DNA repair and recombination proteins [BR:
eaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Q3M24_01115 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XCN73385
UniProt:
A0AAU8LV32
LinkDB
All DBs
Position
complement(213261..217319)
Genome browser
AA seq
1352 aa
AA seq
DB search
MEELFSFFNKPKGPLVFDKVKISLASPSKILEWSHGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHIKLAAPVAHIWFLKSL
PTKIGSILDMTLKEMERILYFESYAVVRSEVESIPAGSLLNEEQYQEAMEQFPGSFEVGI
GAEAIRDMLKELDLVELSAYLRKEMKETSSVTKRTKLGKRLNIAEAFRDSGNRPEWMILE
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELDAPDIIIRNEKRMLQ
EAVDVLFDNGRRGRTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPH
LRLHQCGLPKKMAQELFKPFIYNKLESLGYVTTIKSARKMVEKGAKEVWDVLDDIVREYP
VILNRAPTLHRLGMQAFEVVLIEGKAIQLHPLVCSAFNADFDGDQMAVHLPLSVEAQVEA
RVLMMSTNNILSPASGSPVIIPSQDIVLGLYYMTRERYGVAGEGTRFSSPAEARMAYDHG
AAHLQARVKVRLKGEMVDTTIGRIIVGELLPDSIPFAVVNKELSKKELGFLVDYTYRHAG
TKDTVILADRLKDLGYEQATRAGISICINDMKIPVNKEEFVEESERKAAEVDEQYSDGLI
TDGEKYNKIVDIWSKATDKITQEMMEEMSVDYVRDASGEVKDLKSFNSVYIMADSGARGS
KDQIRQLAGMRGLMAKPSGAIIETPIKANFREGLSVLEYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQDSTIVEKDCGTMRYTVAEPLLDGGEVIVRIGERILGRVTSDDVVDPQS
GEIIVEMDEEITEDKVEAIEAAGIDRVRIRSVLTCESRRGVCAMCYGRDLGRGHMVNIGE
AVGIIAAQSIGEPGTQLTMRTFHIGGTASRSVEQAEIRSQRAGFVRYKELHSVTNATGFE
VVMNRNAEITVVDEQDVNRERFSVPYGAEIKVADGARVEPGTVIADWDAFAIPIVAEAAG
RIKYGDVIEGDTMQERVDQVTGKVSRVIIHATTAKHSSPRISLKDGRGRTLKLPGVEHDA
RYPLPVGSIISVDEGDEVPAGTVIAKIPRETTKTKDITGGLPRVAELFEVRKPKEQAIVT
EIDGRINFGKELKGKRRVVVTPETGEPREYLVPKAKHVTVHEGDYVKAGDALMDGSILPN
DILRIKGEEELARFLVDEIQEVYRLQGVKINDKHIETIVRQMLKRVRITDPGDTKFMLDQ
LTEKWMFYDENRRVMEEGLQPASAEPQLLGVTKASLSTDSFISAASFQETTKVLTNAAMA
GRVDTLDGLKENVIMGRLISAGTGLSRYKIKS
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
gtggaagaactgttcagcttttttaacaagccgaaagggccgcttgtttttgacaaggtt
aaaatttccctagcgtcaccgtcaaagatattagagtggtcccacggggaggtcaaaaag
cccgagaccattaattatagaaccttcaagccggagcgggacggattattctgcgctaag
attttcggacctgtaaaggactacgagtgtaattgcggaaagtacaaacgcatgaagcac
cggggcgtagtctgtgaaaaatgcggtgttgaagttatccagtccaaggttcgccgcgag
cgtcttggtcatattaaactcgctgcccctgttgcgcatatttggtttctcaagtccttg
ccaaccaagatcggctcgattctggatatgaccctcaaagagatggagcgtatcctctac
tttgagtcctatgcagttgttcgttctgaggtggaaagcattccagcaggaagcttgctc
aacgaagagcagtatcaagaagcaatggagcaatttccaggatcttttgaggtcggcatc
ggtgcggaagcaatccgcgatatgctgaaagagctggatctggttgagctgtcggcgtat
ctacgcaaagaaatgaaggagaccagctcggtgaccaaaaggaccaagctgggaaaacgc
ctgaatattgctgaggcgtttcgtgattctgggaaccgtccagagtggatgatccttgaa
gtgcttccggttctgccacctgatcttcgtcccttggttcctctggaaggtggtcgtttt
gcaacctctgatttgaacgatctctatcgtcgggttatcaaccggaataaccgtttgaag
cgcctgttggagctggatgcaccggatatcatcatccgcaatgagaagcgcatgctgcag
gaagcagtcgacgttctctttgataacggtcgtcggggacgtactattactggaccgaat
aagcgcccgctcaagtcattgtccgacatgcttaaaggaaagcagggacgttttcgtcag
aacctgcttggtaagcgtgttgattactctggccgttccgttattgtggttggtccgcac
ctgcgtctgcatcaatgtgggttacccaagaagatggcccaggagctcttcaagcccttt
atctataataagcttgagtcgctcggctatgtcaccaccattaagagtgctcgcaagatg
gtggaaaagggtgccaaagaggtctgggatgttcttgatgacatcgtgcgagagtacccg
gttattctgaaccgtgctccaaccttgcataggcttggtatgcaggcctttgaggttgtg
cttatcgagggtaaggctattcagctccatcccttggtttgttccgcctttaacgccgac
tttgatggtgaccagatggcggtgcatctgcccctgtctgtggaagcgcaggttgaggct
agggtcttgatgatgtctaccaacaacatcttgtccccggcaagtggtagcccggtcatt
attccgagtcaggatatcgttctcggtctctattatatgacccgtgagcgctacggcgtt
gccggtgagggaacccgattcagttcgccagcagaggcccgcatggcctacgatcacggt
gcggcccatctccaggccagggttaaggtccgcttgaagggagaaatggttgataccacc
atcggcaggattattgttggtgaattgctgccagacagcattccttttgccgtcgtcaat
aaggagctttccaagaaagagctgggcttcctggtggattacacctatcgccatgccgga
acaaaggacactgttattctggctgaccgtctcaaagaccttgggtacgagcaggcgacc
agagctggtatctccatctgcattaatgatatgaagattccggtcaacaaagaagaattt
gttgaggaatctgagcgtaaggcagccgaagttgatgagcagtattcagacggtttgatc
accgatggtgagaaatataataagatcgttgatatctggtcaaaggctacagacaagatc
acccaggaaatgatggaagagatgtctgtggattatgtgcgtgatgcaagtggtgaagtt
aaagatctgaagagctttaactccgtttacatcatggcggactccggtgctcgtggttct
aaggatcagatcaggcagctggccggtatgcgtggtttgatggccaagccttccggcgcc
attattgagactccgattaaggcgaattttcgtgagggcctgtccgtcctggaatatttt
atttctactcacggtgcccggaaaggtcttgcagatacagcgctgaaaacagcaaactct
ggttatctgaccagacgtttggtggatgttgctcaggattctaccattgtggagaaggac
tgcggcaccatgcggtatacggttgccgagccccttctggacggtggtgaggttattgtt
cgtatcggtgaacgtattctcggtcgtgtgaccagtgatgatgtagttgacccgcagagc
ggcgagatcattgttgagatggacgaggagatcacggaggataaggttgaagccattgag
gcagctgggattgacagggtgcggattcgttccgtgctgacctgtgagtcacggcgcggc
gtgtgcgctatgtgctatggtcgtgacctcggtcgtgggcatatggtgaacatcggtgag
gctgtcggtattattgcggctcagtctattggtgagccaggaacccagctgaccatgcgt
accttccatattggtggtacagcaagtcgatcggttgagcaggctgaaatccgcagtcag
cgggcaggttttgttcgttataaggagttgcattcagtaaccaatgccacaggttttgaa
gtggttatgaaccgcaatgctgagatcactgttgttgatgagcaggatgtgaatcgagag
cggttttctgttccctacggtgcggaaataaaggtagcggacggtgccagagttgagccc
ggcacagtgattgcagattgggatgcctttgctattcccattgttgctgaggctgctggt
cgcatcaagtatggtgatgtgattgagggtgataccatgcaggagcgcgttgatcaggta
actggtaaggtctccagggttattattcatgccacaacagccaaacattccagcccgagg
atttcactcaaggacggacgcgggcgtactctcaagctccctggagtggagcatgatgcc
cgctatcctttaccggttggttctattatttctgttgatgagggagacgaggttccagct
ggtacagttattgcgaaaatcccgcgtgagaccaccaagaccaaggatattaccggtggt
ctgccaagggttgctgagctctttgaggtgcgaaaacccaaagaacaggccattgttacg
gaaattgacggtcggatcaactttggcaaggaactgaaaggaaagcgtcgggttgttgta
acccctgaaaccggtgagccaagagagtatctggtgcccaaggccaagcatgttaccgtg
catgaaggtgattatgtcaaggccggtgatgcgcttatggatggctcaatcctgcccaat
gatattcttcgaattaagggtgaggaagaactggctcgctttcttgttgatgagatccag
gaggtctatcgtctccagggagttaagatcaacgataagcatatcgaaaccattgttcga
cagatgctgaagcgagtacgtattacagatcctggtgataccaagttcatgcttgatcaa
ctcacagaaaaatggatgttttatgatgaaaacaggcgggtaatggaagagggattgcaa
cctgcctctgcggagccgcagttactgggtgtaaccaaggcctcattatccacggattca
tttatttctgctgcttccttccaagaaacaaccaaggtcttgaccaacgcagctatggca
ggaagagtggatacactggatggtttgaaagagaacgttattatgggacgtttgatttct
gctggaacgggtttatcgagatacaaaattaaatcgtag
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