Candidatus Electrothrix aestuarii: Q3M24_04400
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Entry
Q3M24_04400 CDS
T10293
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eaj Candidatus Electrothrix aestuarii
Pathway
eaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3M24_04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaj03019
]
Q3M24_04400
03009 Ribosome biogenesis [BR:
eaj03009
]
Q3M24_04400
Enzymes [BR:
eaj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q3M24_04400
Messenger RNA biogenesis [BR:
eaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q3M24_04400
Ribosome biogenesis [BR:
eaj03009
]
Prokaryotic type
rRNA processing factors
Q3M24_04400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
XCN74005
UniProt:
A0AAU8LYQ4
LinkDB
All DBs
Position
929550..931781
Genome browser
AA seq
743 aa
AA seq
DB search
MTNETEKEKNEQQPSQTIRKVTTGAWWKSFKKKRVEKSTQVNGKAKEEAKGVTSRKSQQA
KPAKKKQVAQTPQPSQDTQAPKDAQTALPEKEEIRVEAAPASKQVDSPPSLEIAEAEKIS
PEETTAPAQQEAAPASPEQIERPEPKEEKKRPSRRPRRKGKKPSPPQEAATEATEEKTAQ
KSEPTQEAKGESQEAPAKSTPQKTNRKKRNRKPSSTATQAQKDEQAKQEESAVTGETTPQ
QKKQKVRLLINAEEPEECRIALVEDGRLESFHVSTVVRERTKNNIYKGRIVSIEANLQAA
FVEIGTGRNGFLPFNDIHPEYYRQDVSEQTRALINQQQWKKLKIEDVIKRGQEVLVQVVK
EVTGNKGANMTTYLSLPGRCLVLMPGSDSAGISRKISGEKRRSELRKMMSDFDIPEGVGY
IVRTACAEITKTGLQQDLRYLIGLWRDIKKRGQSSPSPTLLYEDQDTVQRFLRDHFTQDI
QEIIVDTEDCYNQVSSFVELLPSRQQEVQVRLHRGAKPIFNQNNIEEQIESIYQPQVQLL
SGGSIVIDPTEALVAIDVNSGRTSQKDDFEQSIFLANMEAAEELARQLRLRDLGGLIVVD
FIDMRSKNNIKEVEKKVKNAMKRDKAKVDISRISRFGLMQISRQKMGAPIEKGSYRRCEH
CEGRGVVRSVETLALYYLRRIQTGVTRKKVKIVEAELPLEVGQYLLNKKRAEIMELENKH
QARIIILPNPGMKPSENNIRFLA
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatgaaacggaaaaagaaaaaaacgaacaacaaccaagccaaacaatccgcaag
gtaacaaccggcgcctggtggaagagcttcaaaaagaaaagagttgaaaaatctactcag
gtcaatgggaaggcaaaagaagaggccaagggcgtaacatctaggaaatcgcaacaggca
aaaccggcaaagaaaaagcaagtcgcgcagactccacagccctcccaggatacccaagca
ccaaaagatgctcaaacagcactcccggagaaagaggaaatccgcgtagaagctgctcca
gcaagcaagcaggtcgattctcccccttcacttgaaatcgctgaggcagagaagatatct
cctgaggagaccaccgcccctgcgcagcaggaagcagcacctgcttcccctgagcaaatt
gagcgccccgagcccaaggaagaaaagaaaagaccttcccgcaggccgcgaagaaagggg
aaaaagcccagccctcctcaagaggccgcaacagaagcgactgaggaaaaaaccgcgcaa
aagagcgagcctacccaagaggcaaaaggagaatcccaggaggctcctgcaaaaagtacc
cctcaaaaaacaaatcggaaaaaacggaacaggaaaccaagctccacagctactcaggcg
caaaaagatgagcaggccaagcaggaggaatccgcagtcactggcgaaacaactccacag
cagaagaaacaaaaggtccgcctgctcatcaatgctgaagagcctgaagaatgtcgaatt
gctctggtggaagacggacgcctggaatccttccacgtcagtacggtcgtgcgagagcgg
accaagaataatatctataagggccgcattgtctctattgaggccaatctccaggcagcc
tttgtggaaataggtaccggtcgtaacggcttcctgccctttaacgacatccacccggaa
tattatcgccaggatgtaagtgagcagacccgcgccttaatcaaccagcagcaatggaaa
aagctcaagatcgaagatgtgatcaagcgaggccaggaggttctggtccaggtggtcaag
gaggtgactggcaataaaggtgccaatatgaccacctacctttctctgcccggacgttgc
ctagtgctcatgcctggcagtgacagcgctggcatctcccggaaaatatccggggagaaa
cgccgaagtgagctacggaaaatgatgtctgacttcgatattcctgagggcgtgggctat
atcgtgcgcaccgcctgtgcagagatcaccaagacaggtctccagcaggacctccgctac
cttatcggactctggagagatatcaaaaaacggggccaaagctctccttccccgaccctg
ctctatgaggatcaagacacggtgcagcgttttctccgggatcacttcactcaggacatc
caggaaatcatcgttgatactgaggactgttataatcaggtttctagctttgtcgagctc
cttccatctcgtcagcaagaggttcaggtcaggctgcatcgtggggccaagcccatcttc
aaccagaataacattgaagaacagattgaatccatctaccagccccaggtacagttgctc
tcaggtggttctattgtcattgatcccacggaggcccttgtcgccattgatgtcaactca
ggccgcacctcgcagaaagatgattttgagcaatccatcttcctggccaatatggaggca
gcagaagagctggcgcgccaactccgtctgcgggatctgggcggcctgattgtagtggac
ttcattgatatgcggagcaagaacaacatcaaggaggtggagaagaaggtcaagaatgcc
atgaaacgggataaggccaaggtggatatcagccgcatctcccgcttcggcctgatgcag
atctcccgccagaagatgggcgcccccattgagaaaggcagctatcgccgttgtgagcat
tgtgaaggtcgcggggtggtccgctctgtggagaccctggcactctactatctccgtcgc
atccagactggagtaacccgcaagaaggtaaaaattgtggaagccgagctccccctggag
gttgggcaatatctgcttaataagaaacgggctgagatcatggagctggagaataagcat
caggcccgcattattatcctaccaaaccctgggatgaaaccgagcgagaataacatccgc
tttctggcttaa
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