Candidatus Electrothrix aestuarii: Q3M24_05815
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Entry
Q3M24_05815 CDS
T10293
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
eaj Candidatus Electrothrix aestuarii
Pathway
eaj02020
Two-component system
eaj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
eaj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q3M24_05815 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Q3M24_05815 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaj03021
]
Q3M24_05815 (rpoN)
Transcription machinery [BR:
eaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q3M24_05815 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_26
HTH_21
HTH_IclR
VHL_C
CENP-B_N
Motif
Other DBs
NCBI-ProteinID:
XCN74264
UniProt:
A0AAU8LYS5
LinkDB
All DBs
Position
complement(1254568..1256013)
Genome browser
AA seq
481 aa
AA seq
DB search
MSLELRQQVKLTQKLVMTQQLRQAIKLLQLNRLELTNALHEEMAQNPMLEEVVGVQETVS
NPESLSAEEAQDSVELAASSQVAGDDPKTVAEVDWEDYSNNFDSDFSFSREAPPSDAPSQ
FDFISAAPGLISFLEWQLSHLKLDEKDEDIARFILGSINGHGFFEASIEDICDYAGCSIE
EAEGMLRLVQSLDPPGVAARDLRESLLLQLEREGMEDDLAYLLVADHLDELQTHNFTKIA
AKIDYTAREVRNAFSVITSLNPYPGNEYSNEQTNYVVPDVYLHRLDGEFIIQLNNDGMPQ
LQLSAEYQELMKDKAGTDSKGYLTEQKRNAQNFINSVHYRQNSIYKVMKSLLKFQHDFFE
QGPGHLKPLVLNDVAQDIGLHESTVSRITSNKYVHTPQGLYELKFFFSSAVTTTDGNLVA
SEVIKNRIRQLIQQEPPEKPLSDNLISEMLKEEGVNVARRTVAKYRDQMKILPVKHRRKS
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgaactccgacagcaagtaaaacttactcaaaaactggttatgacgcagcaa
ttgcgtcaagccattaagcttctgcagctgaaccgcttggaattgaccaatgctctgcac
gaagagatggcccagaatcccatgttggaggaagttgttggtgttcaggaaacagtgagt
aatcccgaatcattatcagctgaagaggcccaggattctgtggagttggcagcctcctca
caggtcgcgggtgatgacccgaaaaccgtggccgaggtggattgggaggattattccaac
aattttgattccgacttttccttttccagagaagcccctccaagtgatgctccatcgcag
tttgattttatctctgctgctcccggtctcatttcgttcttagaatggcaactttcccat
cttaagcttgacgaaaaagatgaagatatcgcccgatttatcctggggagtatcaatggg
catggtttcttcgaggcctcaatcgaggatatatgtgattatgcaggttgcagtatagaa
gaggccgaagggatgttacgtctggtgcaaagccttgacccgccaggggtagcggccagg
gatctacgcgaatctctgctcttgcagttggagagggaggggatggaagatgacttggcc
tacctgcttgttgctgatcacctggatgaactacaaacccataatttcactaagattgct
gctaagattgattatactgcccgtgaagtccgcaacgcttttagtgttattacctcatta
aatccatatccagggaatgaatatagtaatgagcagaccaattatgttgttcctgatgta
tatttgcataggttagatggtgaattcattattcagttgaataacgacgggatgccgcag
ttgcagctttctgcggagtatcaggagctgatgaaggacaaggcaggaacagattccaag
ggatatttgaccgagcagaagcgaaacgcacagaattttatcaattcggttcattatcgg
cagaattctatttataaggtcatgaagagcctgctcaaattccaacatgatttttttgaa
caagggccgggacatctgaagcctctggtgttgaatgatgtagcacaggacatcggtctt
catgaatccactgtcagtcgcattacctcgaataaatatgtgcatacgcctcaagggctg
tatgagttgaagttcttcttttccagcgcagtcacgacaactgatggaaatttggtggca
tccgaagtaataaaaaatcggatcaggcagcttatccagcaggagcccccggaaaagccg
cttagtgataatcttatttctgaaatgttaaaggaagagggggtcaatgttgcccggaga
acagtggcaaaatatagggatcaaatgaaaattcttccagttaaacatcgtcgtaaaagt
cgttga
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