Candidatus Electrothrix aestuarii: Q3M24_22240
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Entry
Q3M24_22240 CDS
T10293
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eaj Candidatus Electrothrix aestuarii
Pathway
eaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3M24_22240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaj03019
]
Q3M24_22240
Enzymes [BR:
eaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q3M24_22240
Messenger RNA biogenesis [BR:
eaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q3M24_22240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_19
AAA_30
AAA_22
P-loop_SecA
Flavi_DEAD
Shikimate_DH
UTP25_NTPase-like
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
XCN72963
UniProt:
A0AAU8LVT1
LinkDB
All DBs
Position
complement(4839630..4840889)
Genome browser
AA seq
419 aa
AA seq
DB search
MNFTEFGFTPAIITAIKKCGYNTPTDIQQQAMPHLVQGRDLLGLAQTGTGKTAAFVLPTL
QRLTVKAGKKIQALILTPTRELAEQVHENICQLSQGTRLKSCTIYGGVSKNSQVQKLRQG
VDIVVACPGRLLDHINSKTIDLSSIDMLILDEADQMFDKGFLPDIRRILKQVPRQRQSMV
FSATMPKEIRCFVEEILTDPVTVRVNYEKPTATIKHALFQVTQGQKTALLKHILQHEKMT
TTLVFTRTKHKAKNLARQLQQCGFKATSLQGNLSQNQRKRAMDGFRTGAFNILVATDIAA
RGIDVSGISHVVNYDMPDTVETYTHRVGRTGRAEQTGDAYTFAIHDDAKMILAVERRFGK
KIPRKTVDVLDNTAHNLPAASLAGAGEKKKSVSAPSRRKTKNKSRKQRSSSFDFGLSAR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaattttacagaatttggtttcaccccggctataattactgctatcaaaaaatgcggt
tataataccccgacagatattcagcaacaggctatgccgcaccttgtgcaggggcgcgat
ttactgggacttgctcagaccgggaccggtaaaacagcagcatttgttttgcctaccctg
caacgccttactgttaaggccggaaaaaaaatacaggccttgatcctgactccgacccga
gagcttgcagaacaggttcatgaaaatatctgtcagttgagccagggaacccgattgaaa
agttgtacgatttacggcggggtgagtaaaaatagtcaagtgcaaaagctcaggcagggg
gtagatattgtggttgcctgtcccggtcgtctgcttgatcatattaactcgaaaactatt
gatctttcttcgattgacatgctgattcttgatgaagcagatcagatgtttgacaaaggg
tttctcccggatattcgtcgcattcttaagcaggtaccgcgtcaaaggcagagtatggtt
ttttctgcaaccatgcctaaagaaatccgttgctttgttgaggaaattctcactgatccg
gtgacggttcgggttaattatgaaaaaccaaccgcaactattaagcacgcgctcttccag
gtaacgcaggggcagaaaacagccttgttgaagcacattctgcagcatgaaaaaatgacc
accaccctggtgtttacccggaccaagcataaagcgaaaaatttggccagacaactgcaa
caatgcggtttcaaggcgacgtcactccagggtaacctgtcccagaaccagcgaaaaagg
gcgatggacggcttcagaaccggagcctttaatattttggttgccacagatatcgctgca
cgaggcattgatgtgtcaggtatttctcatgttgttaattacgatatgccagataccgtc
gagacatatacgcatagagtcggacggaccggcagggcggagcagacaggtgatgcctat
acctttgcaatccatgatgatgcaaaaatgatcttggccgttgagcgcagattcgggaaa
aaaattccccgtaagaccgttgacgttcttgataatacggctcacaatctccctgccgca
agcttggctggtgcgggtgagaaaaagaagagtgtatctgctccctcacgtcgtaaaaca
aaaaataaatcgagaaagcagcgttccagctcgtttgacttcggtttatctgcaagatag
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