Candidatus Electrothrix aestuarii: Q3M24_23305
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Entry
Q3M24_23305 CDS
T10293
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
eaj Candidatus Electrothrix aestuarii
Pathway
eaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q3M24_23305 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaj03021
]
Q3M24_23305 (rho)
03019 Messenger RNA biogenesis [BR:
eaj03019
]
Q3M24_23305 (rho)
Transcription machinery [BR:
eaj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Q3M24_23305 (rho)
Messenger RNA biogenesis [BR:
eaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q3M24_23305 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
AAA_22
NACHT
Mor
AAA
AAA_25
ResIII
S1CSD-TOTE-2
Spore_III_AA
AAA_19
AAA_14
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
XCN73160
UniProt:
A0AAU8LUH1
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All DBs
Position
5082067..5083314
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AA seq
415 aa
AA seq
DB search
MNPTELKNKNIKELVALAASLRIEGYSSMRKQELIFAILKSQADEDGKLRGSGVLDVLQD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRLNLRTGDTIEGEVRAPKENERYFALLKVDKVN
HDDPEECNNKTLFVNLTPLHPDQQINLEDEPDNYSTRVMNMVAPLGKGQRGLIVAPPRTG
KTVLMQHIAQSIVKNHKEIIPIVLLIDERPEEVTDMKRSVNAEVVSSTFDEPPQRHIQVA
EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKILSGGVEANALHRPKRFFGA
ARNIEEGGSLTILATALIETGSRMDDVIFEEFKGTGNMELVLDRKMSDRRIYPAINIQKS
GTRKEDLLLSEEEMNRMWILRKLLASMNPADAMEFLLGKMEQTKTNGEFFASMNS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctactgagttaaaaaataaaaatattaaagaacttgtcgcactggcagcatct
ttgcgtattgaaggatacagctccatgcggaaacaggagcttatcttcgctatcctcaaa
tctcaggccgatgaagacggtaagcttcgcggaagcggggtccttgacgtactgcaagat
gggttcggctttctccgggcaccggattacaactacctgcccggccctgacgatatctat
gtttcgccctcccagatccgacgactcaacctgcgcacaggtgacaccattgaaggtgaa
gtcagggcacccaaggaaaacgaacgctactttgccctcctcaaagtcgacaaggtcaac
cacgacgaccctgaggaatgtaataataaaaccctgttcgtcaacctcacacctctgcat
cctgaccaacagattaaccttgaggatgagccggataattactccaccagggtaatgaat
atggttgctccactgggtaaggggcagcgtggcctcattgtggcccccccccgcaccggt
aaaacggttctcatgcagcatattgcccagtctatcgtcaaaaaccataaagaaatcatc
cctattgtcctgctgattgacgagcgcccggaagaggttaccgacatgaagcggagcgtg
aacgccgaggtggtcagctccacctttgacgaaccgccccagcgtcatatccaggtagca
gaaatggttattgagaaagccaagcgactggttgagcacaaaaaagacgttgttattctt
ctcgattccatcacccgactggcgcgtgcctataacacggtcacgccagcatcaggtaaa
attctctccggtggtgttgaagccaatgccctgcatcgtccaaaacgctttttcggcgca
gcccgtaatatcgaagaaggcggcagcctgactatcctggccacagctctgattgaaacc
ggcagccgtatggacgatgttatctttgaagaattcaaaggaaccggtaatatggagctg
gtactggatcgcaagatgtccgaccgacggatttatccggccattaatatccagaagtcc
ggtacccgtaaggaagatctgctgctgtctgaggaagaaatgaaccgcatgtggatattg
cgcaaattacttgcctctatgaacccggcagatgctatggaatttctcctcggcaagatg
gagcaaaccaagaccaacggggaattctttgcttcaatgaacagctaa
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