Sinorhizobium alkalisoli: EKH55_0064
Help
Entry
EKH55_0064 CDS
T06241
Name
(GenBank) Helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eak
Sinorhizobium alkalisoli
Pathway
eak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKH55_0064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eak03019
]
EKH55_0064
03009 Ribosome biogenesis [BR:
eak03009
]
EKH55_0064
Enzymes [BR:
eak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EKH55_0064
Messenger RNA biogenesis [BR:
eak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EKH55_0064
Ribosome biogenesis [BR:
eak03009
]
Prokaryotic type
rRNA helicases
EKH55_0064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QFI64938
LinkDB
All DBs
Position
1:complement(67440..69317)
Genome browser
AA seq
625 aa
AA seq
DB search
MKEFEGIAPAIAEALAKRGYETLTPVQQAMLDPAIEGSDVLVSARTGSGKTVAFGLAMAP
TLLDEAKQFGGPAAPLALVIAPTRELALQVKRELEWLYAPAGATIASCVGGMDIRSERRA
LERGAHIVVGTPGRLCDHIRRDSLDISALRAVVLDEADEMLDLGFREDLEFILEAAPAER
RTLMFSATVPRAIATLAKNYQRDAVRIGIASEEKQHGDIEYRSLLVVPSDRENAIINVLR
FYEARNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPGLELVIHADLPTNPDTLLHRSGRTGRAGQKGVSALIVPVNARRRAERLL
ESARITATWAKPPSADEVTRRDEERLLADAAFDEPLRDDERAIVQALIERQGAERLAAAF
LRQFRARRSAPEDLSEVSLADDRRKTRQDGPFSLRDDAAPVWPDFPDGRWFALSVGRKQN
AEPRWLIPMLCRQGGLSKRQIGAIRLQPQETFVELSADGAESLLEAIGPGRTLEKSIRVT
PLTGTPDFSRPSSDKAEFTRKRPPRVEREASEFKPGHKGKKNPGQEIRPERPGETLPGKK
KSYPGAQKERGGFKPKSKPNKPQQR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattcgaagggatcgcgccggcgatcgccgaggcgttggcaaaacgcggttac
gaaacgctgacgcccgtccaacaggcaatgctcgacccggcgatcgagggcagcgatgtc
ctggtttccgcccggaccggatccggcaaaaccgttgccttcggcctggcgatggccccg
accctgcttgacgaggcgaagcagttcggcgggccggctgcaccgctggcgctcgtcatc
gcaccgacgcgcgaattggcgctgcaggtcaagcgcgagctcgaatggctctatgcgccg
gcgggcgcaacgatcgcctcctgcgtcggcggcatggatatccgcagcgagcggcgggcg
cttgagcgcggcgcgcatatcgtcgtcgggacgcccggccggctctgcgaccacatccgc
cgcgactctctcgacatttcggctctgcgggccgtggttctggacgaggccgacgagatg
ctcgatctcggcttccgcgaagatctggagtttatcctcgaggcggcgccggccgagcgg
cggacgctgatgttctccgcgaccgtgccgcgcgcgatcgcgacgctcgccaaaaactac
cagcgcgacgccgtgcgcatcggcatcgcttcggaagagaagcagcatggcgacatcgag
tatcggtcccttctcgtcgtcccgagcgaccgcgagaacgccatcatcaacgtgctgcgc
ttttacgaggcgcgcaacgcaatcgtcttctgttcgacacgcgctgcggtcaaccatctg
acggcccgcttcaacaatcgcggtttctcggtggtggccctttcgggggaactcagccag
aacgagcgtacccatgcgctccaggcgatgcgtgatggacgcgcccgcgtctgcatcgcg
accgatgtcgccgcgcgcggcatcgacctgccggggctcgaactcgtcatccatgccgac
ctgccgaccaacccggatacgctgctgcatcgcagcggtcgtaccggccgggcggggcaa
aagggcgtgagcgcgctgatcgtaccggtcaacgcacgccggcgggcggagcggctgctc
gaaagcgcacgcatcaccgcaacctgggcgaaaccgccctcggccgacgaggtgacgcga
cgcgacgaggagcgccttcttgccgatgccgccttcgacgagccattgcgcgacgacgaa
cgggcaatcgtgcaggcgctgatcgagcgtcagggtgcggaaagactggctgccgctttc
ctgcgccagttccgcgcccgacggtcggcaccggaggacctctcggaagtgtccctcgcc
gacgatcgccggaaaaccaggcaggacggtcctttttcgctgcgcgacgacgcggcgccg
gtttggccggatttccccgacggccgctggttcgcgctttcggtcggacgcaagcagaac
gccgagccgcgctggctgatccccatgctttgccgccagggcgggctttccaagcgccag
atcggcgcgatccgcctgcagccgcaggagacctttgtcgaactgtcggcggacggcgcg
gaaagtttgctggaggcaatcggccccggtcgcacactggaaaagagcatccgcgtcaca
ccgctgacaggcacgccggacttctctcggccatcgtcggacaaggcggagttcacaaga
aaacggcctccacgggtggagcgcgaagcgtcagagttcaagccggggcacaaaggcaaa
aagaacccggggcaggagatccgcccagagaggcccggagagacactgcctggcaagaag
aaatcctatccgggcgcccaaaaagagcgcggcggcttcaagccaaaatccaaacccaac
aagccgcagcagcgatag
DBGET
integrated database retrieval system
