Sinorhizobium alkalisoli: EKH55_1040
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Entry
EKH55_1040 CDS
T06241
Name
(GenBank) Metallo-beta-lactamase family protein, RNA-specific
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
eak
Sinorhizobium alkalisoli
Pathway
eak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKH55_1040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eak03019
]
EKH55_1040
Messenger RNA biogenesis [BR:
eak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EKH55_1040
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Ortholog
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Lactamase_B_3
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QFI65914
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Position
1:1016755..1018422
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AA seq
555 aa
AA seq
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MAQEEELVFLPLGGVGEIGMNLGLYGYGRPGNRQWIMVDCGVTFPGPDLPGVDLVLPDIS
FLAEERRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRDYEKARAEIP
VTVFKSGDRINVGPFSIEAVGVNHSIPEPMSLIIRTPLGTVVHTGDWKIDLEPSLGPLTD
EARFLQVGEEGVLALVCDSTNALRDGVSPSERQVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVAVARDLGLMEGLKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIVTD
GEALVHVSGHPRRNELQQMYQWLKPRTVVPVHGEAAHLTAHAELARHSGIADVPRLRNGQ
ILRLAPGPAEVVDEAPHGRIFKDGMLIGDFDEMGIGERRKLSFAGHVSVNVVLDNRYDFL
NDPVVVPIGLPEFDDEGDDMADVLYDSVLGAVESIPRPKRKDLATLQEAVRRAVRSTANQ
VWGKKPMVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagaagaagaactggtattcttgccgctcggcggcgtcggcgagatcggcatg
aatctcggcctctacggctatggcaggccgggcaaccgccaatggatcatggtcgattgc
ggcgtgaccttccccggcccggacctgccgggggtcgatttggttctgccggatatctcc
ttcctggctgaagagcggcgcaacttgaaggccatcatcatcacgcatgcgcatgaagac
cattatggcgccttgaacgatctttggccggggctgaacgtcccggtctatgcctcgccg
ttcaccgccggcatgctcgaggcgaagcgagactacgagaaggcgcgggccgaaattccc
gtcacggttttcaagtcgggagaccgcatcaatgtgggtcccttcagtatagaggcggtc
ggcgtcaaccactccattcccgagccgatgtcgctcattatccgcacgcctctcggcacc
gtggtgcacacgggcgactggaagatcgatcttgaaccgtcgctcgggccgctgaccgac
gaggcgcggttcctccaggttggcgaggagggcgtgctggcactcgtctgcgattcgacg
aatgcgctacgcgacggcgtttcgccatcggagcgacaggtctccgagagcctggcaaag
atcattgccgatgcggagggccgtgtcggcatcacgaccttctcctccaatgtcggccgc
attcgctcggtcgccgaagcggcggaagccgccggccgggaagtgctcctgctgggcagt
tcgatgaagcgcgtggtcgccgttgcaagggatctcggtctgatggaagggctgaagccg
ttcctcgccgaggacgagttcggctatatcccgcgcgacaaggtcgtcgtcattctgacg
ggaagtcagggagagccgcgggccgcgcttgccaagatcgcccgggacgagatgcgcaat
gtcgcgttctcggccggcgacacgatcgtgttttcgtcgcgcaccattcccggcaatgaa
aaggcgatcaacgacatcaagaacggcttgattgagcagggcatccatatcgtcaccgat
ggcgaggcgctggtgcatgtctccggccacccgcgccgcaacgagctgcagcagatgtat
caatggctgaagccccggaccgtcgtgccggtgcacggcgaggcggcgcatctcacggcc
catgccgagctcgcgcggcattccggcattgcggacgtgccgcgcctgcgcaacggccag
atcctgcgcctggcgccaggtccggcggaggtggtcgacgaggcgccgcacggccgcatc
ttcaaggacggcatgctgatcggcgacttcgacgagatgggcataggcgaacggcgcaag
ctctccttcgccggccatgtctccgtcaacgtcgtgctcgacaatcgttatgatttcctg
aacgatccggtggtcgtgccgatcggacttcccgagttcgatgacgaaggcgacgatatg
gccgacgtgctctatgattcggtgctcggtgcggtggagagtattccccgtcccaagcgc
aaggacctcgcaaccctgcaggaagcggtacggcgcgccgttcgcagcacggccaaccag
gtctggggcaagaagccaatggtcacggttttcgtcaccaaggtctga
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