Sinorhizobium alkalisoli: EKH55_1392
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Entry
EKH55_1392 CDS
T06241
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eak
Sinorhizobium alkalisoli
Pathway
eak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKH55_1392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eak03400
]
EKH55_1392
Enzymes [BR:
eak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKH55_1392
DNA repair and recombination proteins [BR:
eak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKH55_1392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QFI66266
LinkDB
All DBs
Position
1:1363102..1366605
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGLDAKRVVAATREVTIGPVPSGAEALILADLARAGTPVAYFLSDGQRIADLEQVLGF
VAPDIPVLTLPGWDCLPYDRVSPSADISARRLAALSALIAHRAKPHAAIVLVTVNAALQR
ISPRRVIEGLAFSARPGNQVRMDDLAARLERNGFERVPTVREVGEFAVRGGILDVYVPGG
GEPLRLDFFGDTLETIRSFDPVSQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYLSRFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLIREAAAERSKL
ILDYYDARLASASPGKQFPQGTPYKPVPAELLYLGAEAFGTALTERRAVRLSPFSEHEGE
ARQVVTIEARQGLRWAKAVGEESDGERVNVFDHAVKHIAEKRAKGAKVVISGWTEGSLDR
LTQVLAEHGLARIRPIKALSDLGSLKPGEAASAVLSLEAGFETGDLVVIGEQDILGDRLV
RRSKRRKRGADFIAEMTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELLYADDAK
LFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRH
APVLAAQDGVYDEFAARFPYDETEDQLNSIEAVRDDLGSGRPMDRLVCGDVGFGKTEVAL
RAAFIAAMNGIQVAVVVPTTLLARQHYKTFAERFRGLPVRIQQASRLVGSKELALTKKEV
AEGKTDIVIGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPI
PRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRV
SDLSEVHEFLNSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPT
ANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTL
GAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEEIHDTGWSP
QISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPVEVQHLLK
IVYIKALCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRQDQSIFFQ
RELASPEKRLSGAAMVMTQLAGLAKAG
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatacctggcctcgatgcgaagagggttgtggcggcaacgcgggaagtgacgatcggg
cccgtgccctccggcgccgaggcgctgatccttgcggatctggcgcgggcaggaacgccg
gtcgcctatttcctttccgacggccaacggatagccgatctcgagcaggttcttggcttc
gtggcgcccgacattcccgtcttgacgctgccgggctgggactgcctgccttacgaccga
gtgtcgccgagcgccgatatttcggcgcggaggctggccgcattgagcgcgctcattgcg
catcgggcaaagccgcatgcggcgatcgtgctcgtcaccgtcaatgccgccctgcagagg
atttcgccgcggcgggtgatcgaaggtcttgccttttcggcgcggcctggcaaccaggtg
cgcatggacgatctcgccgccaggttggagcgaaacggcttcgagcgggtgccgactgtg
cgcgaggttggcgagtttgccgtgcggggtggcattctcgacgtctatgtgcctggaggc
ggcgagccgctgcgtctcgatttcttcggcgatacgctggaaacgatccgctcattcgac
ccggtcagccagcgcacgacggggcaggtgcgctcgctcgacctcaacccgatgagcgaa
gtgtcgctgacgccggagaccatcagccatttccgcaagcagtatctctcgcgcttcggc
gcggcgactcgcgacgatgcactctaccaggccgtctcggaagggcgccgctatgccggc
atggaacattggctgccgctcttctacgatcgcctggaaacggttttcgactatctcgac
ggcttccgtatcgtcacggatcacctgatccgcgaagcggccgcggagcgctcgaagctg
atcctcgactattatgacgcgcggcttgcatccgcgtcgccgggcaagcagttcccgcag
ggcaccccctacaagcccgtgccggcggaacttctttatctcggcgctgaagcattcggc
accgccttgaccgaacggcgcgctgtgcgcctctcgcccttcagcgaacatgaaggggag
gcgcgtcaggtcgtcaccatcgaggcgcgtcagggcctgcgctgggccaaggccgttggc
gaggagagtgacggcgaacgcgtcaatgtcttcgaccatgcggtcaagcacatcgcggaa
aagcgggcgaagggtgcgaaggtcgtcatttccggctggacggaaggatcgctcgaccgg
ctcacccaggttcttgccgagcatggtcttgcaaggatccgcccgatcaaggcgctctcc
gacctcggctctttgaaaccgggcgaggcggcatccgcggttctcagccttgaggcggga
ttcgaaaccggcgatctcgtcgtcattggcgagcaggatattctcggtgaccggctagtg
cgccgctcgaagcgccgaaagcgtggcgccgacttcatcgccgagatgacgggcctcgac
gaggggagctatgtcgtgcatgcggagcacggcatcggccgctttgtcggcctgcgcacg
atcgaggccgccggcgcgccgcatgattgcctcgagctcctctatgccgacgacgccaag
cttttcctgccggtggaaaacatcgagcttctgtctcgctacggttcggaagggacagac
gcaatcctcgacaagctcggcggcgtcgcctggcaggcgcgcaaggccaagctcaagaag
cggctgctcgacatggccggcggtctcatccgcattgccgccgaacggcacacgcggcat
gcgccggttctcgccgcccaggacggcgtctatgacgaattcgccgcacgcttcccctac
gacgagaccgaggatcagctgaactcgatcgaggccgttcgcgatgatctcggcagcggc
cggccgatggaccgtctggtctgtggcgatgtcggattcggcaagacggaggtggcgctg
cgtgccgctttcatcgcggcgatgaacggcatccaggtcgcggtcgtcgtgccgacgacc
ttgctggcgcgtcagcactacaagacttttgccgaacgtttccgcggcctgccggtgcgc
atccagcaggcctcccgccttgtcggctcgaaggaactggcactgaccaagaaggaagtc
gcggagggcaagaccgacattgtcatcggcacccatgcgctgctcggttcctcgatcaag
ttcgccaatctcggtctgctcatcatcgacgaggagcagcatttcggcgtcaagcacaag
gagcggctgaaggagctgaagaccgacgtccacgtgctgacgctatcggcgacgccgatc
ccgcgaacgctgcagcttgctctgacgggcgttcgcgaattgtcgttgatcactacgccg
cccgtcgatcgcatggcggtgcgtacctttatttctcccttcgatgcgctggtgatccgc
gagacgctcatgcgcgagcattatcgtggcggccaaagcttttacgtctgcccgcgggtg
agcgacctttccgaggttcacgagttcctgaattccgacgtaccggagttgaaggtcgcg
gtggcgcacggccagatgccggctaccgaactcgaagacatcatgaacgccttctatgag
ggccgctatgacgtgctgctttcgacgacgatcgtcgaatccggcctggacgtaccgacc
gccaacacgctgatcgttcaccgcgccgatatgttcggcctggctcagctctaccagctg
cgcggccgggtcggccgctcgaaggtccgcgccttcgcgctcttcacgttgcccgtcaac
aagacgctgacgggcccggcggagcgccggctgaaggtgctgcagtcgctcgataccctc
ggcgccggcttccaactggcgagccacgatctcgatatccgcggcgcgggcaatctgctc
ggcgaggagcagtccggccacatcaaggaggtcggcttcgagctttaccagcagatgctt
gaggaggcggtcgccgaactcaagggcgaggaggagatccacgacactggctggtcgccg
cagatctcggtcggaacgccggtcatgatcccggaagaatacgtacccgatctcaatctc
cgcctcggcctctatcgacgcctcggtgaactgacggacctcaaggaaatcgatggcttc
ggcgccgaactgatcgaccgcttcggcccgctgccggtcgaggtccagcatctcctgaag
atcgtttacatcaaggcgctgtgccggacggcgaatgtggaaaagctcgatgccggaccc
aagggcgtcgtcgtccagttccgcaacaaggagttccccaacccggcggccctcgtcggc
tatatcgccaagcaggggacggtcgccaagatccggcaggaccagagcatcttcttccag
cgggagcttgcatcgccggaaaagcggctttcgggcgctgcgatggtgatgacccagctc
gcggggcttgcgaaagcgggatga
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