Sinorhizobium alkalisoli: EKH55_3337
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Entry
EKH55_3337 CDS
T06241
Name
(GenBank) hypothetical protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
eak
Sinorhizobium alkalisoli
Brite
KEGG Orthology (KO) [BR:
eak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eak03019
]
EKH55_3337
Enzymes [BR:
eak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EKH55_3337
Messenger RNA biogenesis [BR:
eak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EKH55_3337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
AAA_19
AAA_30
ResIII
AAA_22
Flavi_DEAD
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QFI68211
LinkDB
All DBs
Position
1:complement(3408047..3410506)
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AA seq
819 aa
AA seq
DB search
MRPLPPLPVLDILPALAEALDQAGSAVLSAPPGAGKTTLVPLFLLDQPWVKNGKIILLEP
RRLAARAAASRMAELLGEKPGETVGYRMRLDNRISAKTRIEVVTEGVFTRMILDDPELSG
VSAVLFDEFHERSLDADFGLALALDVQSALRDDLRIIVMSATLDVERVSKLLGNAPVLKS
EGRSFPVEIRHETRNLSESVEDTVVRTITTAHRAEAGSILAFLPGQAEIARTAERLSVRF
SENTLVVPLFGNLSQKEQDAAIRPALPGTRKIVLATSIAETSITIDGVRIVVDSGLQRLP
VFEASTGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHAGQTAALAAFTPPQILASD
LSGLLLDLAHWGVADPSSLSFIDPPPETTLREARSLLVELGALDAQGALTPRGRKVRDLA
LPVRLAAMAASAAEEGQASEACLIAVMLTEQGLGGNSLDIEERLRRFRSDRGERAEAARR
LARRMAADLCGAGTDASRALPGPLLMHAFPDRIALQRGGRGRFVMANGRGAEVSATERLA
AAEMLVIADLTGRAGAQRVLAAAEINRGDVEAHMPGAIVREEQSFFDWTSRQVRARRVTR
LGAIIFEETPLPRPSGEAAARALADGVRQLGLAAVPFPKDVAQLRHRIGFLHRSLGEPWP
DMSDTALLERLDEWFAPYQGEASGIDGIRGGDLAEGLLSLVPYDLQRDLARFAPTHFEAP
TGQRHPIRYDGDEPLLSIRVQELFGLKTHPTIGDGRLPLLLELVSPGHRPIQTTRDLPGF
WAGSWKDVRADMRGRYPKHPWPEDPANAAPTTRAKPRGT
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcgaccgcttccgccccttccggttctcgatattctgcctgcgctcgccgaggcgctc
gatcaggcaggttcggccgtgctctcggcgcctcccggcgccggcaagacgaccctggtg
ccgctcttcctccttgaccagccctgggtgaagaacggcaagatcatcctgctcgagccc
cgccgccttgcggcgcgggccgcggcgagccgcatggccgaactcctcggcgaaaagcct
ggcgagaccgtcggctatcgcatgcggctcgacaaccgcatttccgcaaaaacgcggatc
gaggtggtgaccgaaggcgtcttcacccgcatgatcctggacgaccccgagctttccggc
gtgtcagccgttcttttcgacgaattccacgagcgatcgctagacgccgacttcggtctc
gcccttgccctcgacgtgcagtcggccttgcgcgacgacctgaggatcatcgtcatgtcg
gcgacgcttgacgtggagcgcgtttcgaaactgctcggcaacgccccggtgctcaagagc
gagggccgcagctttccggtggaaatccgccacgaaaccaggaacctgtccgaaagcgtc
gaggatacagtggtgcgcacgatcaccacggcgcaccgcgccgaagccggttcgatcctc
gcttttctccccggccaggccgagattgcccgcacggcggaacgtctttccgtgcgcttc
agcgagaacaccctggtcgtgccgcttttcggcaatctcagccagaaggaacaggatgcg
gcgatccggccggcactgccgggcacccgtaagatcgtgctcgcgacatcgattgccgag
acctcgatcaccatcgacggcgtgcgcatcgtcgtagacagcggcttgcagcggctgccc
gtattcgaagcctcgacgggaatcacgcggctggaaaccgttcgcgtttcgcgcgcctcc
gccgaccagcgcgccggacgcgccgggcgaaccgagccgggcatcgcgatccggctgtgg
cacgccgggcagacggcagcgctcgcagccttcacgccgccgcagattctcgcaagcgac
ctttccggcctgctgctcgatctcgcccattggggcgtagccgatccttcgtcgctttcc
ttcatcgacccgccgccggagacgaccttgcgcgaggcacgcagccttctggtcgaactc
ggcgcgctcgatgcccagggcgcgctgacgccgaggggccgcaaggtccgcgacctcgcc
ctgcccgtgcggctcgccgccatggcggcctcggccgccgaggagggccaggcatcggaa
gcctgcctcatcgccgtgatgctgacggagcagggcctcggcggcaacagtctcgacatc
gaggagcggctgcggcgctttcgaagcgatcgcggcgaaagggccgaggccgcgcgccga
ctcgccagacgcatggctgcggatctctgcggagcaggaaccgatgcttcgcgtgccctg
ccggggccgctgctgatgcacgcctttcccgatcgcattgcgcttcagcgtggcggccgc
ggccgcttcgtgatggccaatgggcggggcgcagaagtgtcggcaaccgaaagactggca
gcggccgaaatgctggttatcgcagatctgacgggacgggcgggcgcgcagcgcgtcctt
gcggccgcggagatcaaccggggggacgtcgaggcgcatatgcccggagcaatcgtccgc
gaggagcagagcttcttcgactggacgagccggcaggtgcgggcccgccgggtgacgcgg
ctgggcgccatcatcttcgaggagacacctctgccccggccgagcggcgaggcggccgca
agggcgctcgcggatggcgtaaggcaattggggctcgctgcggtaccctttccgaaggac
gtggcgcagctgcgccaccgcatcggcttcctgcatcgctcgctcggcgagccttggccc
gacatgtccgatacggcactcctcgagcgcctcgacgagtggtttgcgccctatcagggg
gaggccagcggcatcgacggcatccggggtggcgatctggccgaaggccttctctccctc
gttccttacgatctccagcgcgatctcgcgcggttcgcaccgacgcatttcgaggcgccg
acgggacagcggcatcccatccgctacgacggagacgagccgctcctgtcgatccgcgtg
caggagctctttgggctaaagacgcatccgacgatcggcgacgggcggctgccgctgctt
ctcgagctggtctcacccggccaccgcccgatccagaccacccgcgacctgccgggcttc
tgggccggctcctggaaggacgtgcgcgcggacatgcgtgggcgctacccaaaacacccc
tggccggaagatcccgccaatgccgcgccgacgacgcgggcgaaaccgcgtgggacgtag
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