Escherichia albertii: EAKF1_ch0077c
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Entry
EAKF1_ch0077c CDS
T03986
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
eal
Escherichia albertii
Brite
KEGG Orthology (KO) [BR:
eal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eal03019
]
EAKF1_ch0077c (hrpA)
Enzymes [BR:
eal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EAKF1_ch0077c (hrpA)
Messenger RNA biogenesis [BR:
eal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EAKF1_ch0077c (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
ResIII
AAA_16
PhoH
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AHE58001
LinkDB
All DBs
Position
complement(80098..84000)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKLTFNALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDLAAGK
VLLREAARPEITYPDNLPVSQKKQDILDAVRDNQVVIVAGETGSGKTTQLPKICMELGRG
IKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVEELSQESPGDILIFMSGE
REIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
ASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQ
LRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGL
FKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAHGAVMATE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELE
HKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGA
EKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRR
ELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDW
HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGQVWTEEGFAALHEK
VRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTG
NGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQTWQQWINKLPPARREDED
VKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQVTA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacagaaattgacttttaacgcccttcagcaacgcctggattcgttaatg
ttgcgtgacagactgcgtttttctcgccgtctgcatggggtgaaaaaggttaaaaatcct
gatgcacaacaggccattttccaggagatggcgaaagaaattgacctggcggcagggaaa
gttctgctacgagaagcggcacgcccggaaattacctatccagataatttgccggtgagt
cagaaaaaacaggacattctggacgctgtgcgtgataaccaggttgtgattgtcgctggg
gaaacagggtctggtaaaaccactcagttgccgaaaatctgtatggaactggggcgtgga
attaaaggtctgatcggacatacccaacctcgtcgtctggcggcacgtaccgtggcgaac
cgtattgcggaagagttgcaaacagagccgggcggctgcatcggttataaagtccgtttt
agcgatcacgtcagtgataacacgatggtcaagctgatgactgacggtattctgctggcg
gaaatccagcaggatcggctgctgatgcaatacgacactatcatcatcgatgaagcgcac
gaacgtagcctgaatatcgattttctgctcggctatttgaaagagctgttgccgcgtcgc
ccggatctgaaagtgatcatcacctcagcaactatcgatccagaacgattctcacgtcat
tttaataatgcgccaattattgaagtctccggtcgcacttatccggtggaagtgcgttat
cgcccgattgttgaagaagccgatgacaccgagcgcgaccagttgcaggctattttcgat
gcggtagaagagctaagtcaggaaagccctggtgatatcctgatctttatgagcggcgag
cgagaaattcgcgataccgccgatgcgttgaataagttgaatttgcgtcatacggaaatt
ctgccgctctatgcacgactgtctaacagcgaacagaatagggtgttccagtcgcacagc
ggacggcgcattgtactggcgaccaacgtcgcggaaacctcgctgaccgtaccgggtatt
aaatacgttatcgaccctggcacagcgcgtatcagtcgttatagctatcgcaccaaagtg
cagcgtttgcctattgagcccatttcgcaggcttctgctaatcagcgtaaaggccgctgc
ggacgtgtgtcagaagggatctgtattcgtctctattccgaagacgatttcctctcgcgc
ccggagtttaccgacccggagattctgcgtaccaacctggcctcggttattttgcagatg
accgcgctgggactgggcgatatcgccgcgttcccgtttgtcgaagcgccagataaacgc
aatattcaggacggcgtgcgtctgctcgaagaattaggcgcgatcaccactgatgaacag
gccagcgcctataaactgacgccgcttggtcgccagctttcacaactgcctgtcgatcca
cgtctggcgcgtatggtgctggaagcgcagaaacatggctgcgtgcgtgaggcgatgatt
atcacgtccgcgctctccattcaggacccacgtgagcgtccgatggacaaacagcaggca
tcggacgaaaaacatcgtcgtttccacgacaaagaatccgacttcctggcgtttgtaaat
ctgtggaattatctcggcgagcagcaaaaggcgctctcttcaaacgccttccgccgcctg
tgtcgcaccgattatctcaactacctgcgcgtgcgcgaatggcaggatatctatacccag
ttgcgccaggtagtgaaagaacttggcattccggttaacagcgagccggcggagtatcgt
gaaattcacattgcgttgctgaccggtttgctttcgcatatcggcatgaaagatgccgat
aaacaggaatataccggagcacgtaacgcgcgtttctccatcttccccggttccggttta
ttcaaaaagccgccgaaatgggtaatggtggcagaactggtagagaccagccgcctgtgg
ggacgcattgcggcacgcatcgatcctgaatgggtagagccagttgctcagcatttaatc
aaacgcacctacagcgaaccgcactgggaacgggcgcatggcgcggtgatggcaaccgaa
aaagtcaccgtttacgggctgccgattgttgctgcgcgtaaggtcaactacagccagatc
gatccggcgttatgtcgtgaactctttattcgccacgcgctggtggaaggtgactggcag
acgcgtcacgcattcttccgcgaaaatctgaaactgcgggccgaagtggaagagctggaa
cacaaatcacgtcgccgcgatattctggtggatgacgaaacgttgtttgagttttacgac
cagcgcatcagccacgatgtgatctccgcacgccacttcgacagctggtggaaaaaagtt
agccgcgaaacgcctgatttgctcaactttgaaaagagcatgttgatcaaagaaggtgcg
gaaaaaatcagcaagctggattatccgaacttctggcatcagggcaatctcaagctgcgt
ttgagctatcagtttgagccgggggcggatgctgacggcgtgaccgtgcatattccgctg
ccgttacttaaccaggttgaggagagcggatttgaatggcagatccctggcctgcgtcgt
gagctggttattgcactgataaaatcgctgccgaaaccggtacggcgtaattttgtaccc
gcgccaaactacgccgaagcgtttttaggccgcgtcacaccgctggagctgccgttgctc
gatagcctggagcgcgagctacggcggatgacaggcgttaccgttgaccgcgaagactgg
cactgggatcaggtgcccgatcacctgaaaattaccttccgcgtggtggacgacaaaaat
aagaagctaaaagaagggcgctcattacaggatctgaaagacgccctgaaaggcaaagta
caggaaacgctgtccgcagtggcggatgacggtatcgagcagagcggcctgcatatctgg
agctttggtcaactgccggaaagctacgaacagaaacgcggcaattacaaagtgaaagcg
tggccggcgctggtggatgaacgcgacagcgtggcgatcaaactgtttgataacccgctc
gaacaaaagcaagcgatgtggaatggtcttcgccgtttactgctgctgaatattccatcg
ccgattaagtatctgcatgagaagttaccaaacaaagccaagctgggtctgtactttaat
ccgtatggcaaagtgctggagctgatcgatgactgtatctcctgtggtgtggataaatta
atcgacgccaatggtggccaggtctggacggaagaaggctttgcggcgttgcatgaaaaa
gtgcgcgctgaactgaacgacacggtggtggatattgcgaagcaggtcgagcaaatcctt
acggcagtgttcaatatcaacaaacgcctgaaagggcgcgttgatatgaccatggcgctg
gggctttctgacatcaaagcgcagatgggcgggctggtgtatcgcggttttgtcactggc
aacggcttcaaacgcctgggcgataccttgcgttatttgcaagcgattgagaaacggctg
gaaaaactggcggtcgatccgcatcgtgatcgcgcccagatgctgaaagtcgaaaacgtc
cagcagacgtggcagcaatggatcaacaagctgcctcccgcgcgccgtgaagacgaagac
gtaaaagagatccgctggatgattgaggagttgcgcgtcagctacttcgcgcaacagctc
ggcacgccatatccgatctctgataagcgtattttgcaggcgatggagcaggttaccgcc
tga
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