Escherichia albertii: EAKF1_ch1931c
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Entry
EAKF1_ch1931c CDS
T03986
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eal
Escherichia albertii
Pathway
eal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAKF1_ch1931c (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eal03021
]
EAKF1_ch1931c (rpoB)
03400 DNA repair and recombination proteins [BR:
eal03400
]
EAKF1_ch1931c (rpoB)
Enzymes [BR:
eal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAKF1_ch1931c (rpoB)
Transcription machinery [BR:
eal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAKF1_ch1931c (rpoB)
DNA repair and recombination proteins [BR:
eal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAKF1_ch1931c (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AHE59809
LinkDB
All DBs
Position
complement(2033977..2038005)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGAVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQITLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaagttcatcgag
caagatcctgaagggcagtatggtctggaagctgctttccgttccgtgttcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgtccaggaatgtcaaatccgtggcgtgacctattccgcaccgctgcgcgttaaactg
cgtctggtgatctatgagcgcgaagcgccggaaggcgccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgactgacaacggtacctttgttatcaacggt
actgagcgtgttattgtttcccagttgcaccgtagtccgggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgcatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtatcgaccgt
cgccgtaaactgcctgcgaccatcattctgcgtgccctgaactacaccactgaacagatc
ctcgacctgttctttgaaaaagttatttttgaaatccgcgacaacaagctgcagatggaa
ctggtgccggaacgcctgcgtggtgaaaccgcctctttcgacatcgaagctaacggtaaa
gtgtacgtagaaaaaggtcgccgtattactgcgcgccacattcgccagctggaaaaagac
gacgtcaaactgatcgaagttccggttgagtacatcgcaggtaaagtggttgctaaagac
tacattgatgagtctaccggcgagctgatctgtgctgcgaacatggagctgagcctggat
ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggcccatatatctctgaaaccttacgtgtcgacccaactaatgaccgtctg
agcgcactggtagaaatctaccgtatgatgcgccctggcgagccgccgactcgtgaagct
gccgaaagcctgttcgagaacctgttcttctccgaagaccgctatgacctgtctgcggtt
ggtcgcatgaagttcaaccgttctctgctgcgggaagaaatcgaaggttccggtatcctg
agcaaagacgacatcattgatgttatgaaaaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg
gagaaccagttccgcgttggcttggtacgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttctgca
gcagtgaaagagttcttcggttccagccagctgtctcagtttatggaccagaacaaccca
ctgtctgagattacgcacaaacgtcgtatctccgcactcggccctggcggtctgactcgt
gaacgcgcgggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcct
atcgaaacgcctgaaggtccgaacatcggtctgatcaactctctgtccgtgtacgcacag
actaacgaatacggcttcctcgagactccgtatcgtaaagtgaccgatggtgtggtaacc
gacgaaattcactacctgtctgctatcgaagaaggcaactacgttattgcccaggcgaac
tccaatctggatgaagaaggccgcttcgttgaagacctggtaacttgtcgtagtaaaggt
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccaacaggtg
gtatccgtcggtgcgtccctgatcccgttccttgaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgtgctgataagccgctggtt
ggtacgggtatggaacgtgctgttgccgttgactccggtgtaactgcggtggctaaacgt
ggtggtgtcgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgaa
atgtatccgggcgaagcaggtatcgacatctacaacctgaccaaatacacccgttctaac
cagaacacctgtattaaccagatgccgtgtgtgtctctgggtgaaccagtagaacgtggc
gatgtgctggcagatggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtagcgttcatgccgtggaatggttacaacttcgaagactccatcctcgtctctgag
cgtgtggttcaggaagaccgtttcaccaccatccacattcaggaactggcgtgtgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggtgctgaagtaactggtggc
gacatcctggtgggtaaggtaacgccgaaaggtgaaacccagctgaccccagaagaaaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggtgtatccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaagcgtgcgctggaaatcgaagaaatgcagctcaaacaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagcgggtctgttcagccgtatccgcgctgtgctggta
gccggtggcgttgaagctgagaagctcgacaaactgccgcgcgatcgctggcttgaactg
ggcctgaccgacgaagagaaacaaaatcagctggaacaactggctgagcagtatgacgaa
ctgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtatatctggcggttaaacgtcgtatc
cagcctggtgacaagatggcaggtcgtcacggtaacaagggtgtaatttctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtattggcgacaagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa
ctgcgcgaattcatccagcgtgcgtacgatctgggcgctgacgttcgtcagaaagttgac
ctgagtaccttcagcgatgaagaagttatgcgtctggctgaaaacctgcgcaaaggtatg
ccaatcgcaacgccggtcttcgacggtgcgaaagaagcagaaattaaagaactgctgaaa
ctgggcgacctgccgacttctggtcagatcactctgtatgacggccgcacaggtgaacag
ttcgaacgtccggtaaccgtaggttacatgtacatgctgaaactgaaccacctggtcgac
gacaaaatgcacgcgcgttctaccggttcttacagcctggttactcagcaaccgctgggt
ggtaaggcgcagttcggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcc
tatggcgcggcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggagccgggcatgcca
gaatccttcaacgtattgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa
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