Escherichia albertii: EAKF1_ch2543
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Entry
EAKF1_ch2543 CDS
T03986
Symbol
rtcB
Name
(GenBank) RtcB protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eal
Escherichia albertii
Brite
KEGG Orthology (KO) [BR:
eal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eal03016
]
EAKF1_ch2543 (rtcB)
Enzymes [BR:
eal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EAKF1_ch2543 (rtcB)
Transfer RNA biogenesis [BR:
eal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EAKF1_ch2543 (rtcB)
Prokaryotic type
tRNA splicing ligases
EAKF1_ch2543 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Trm732_C
Motif
Other DBs
NCBI-ProteinID:
AHE60412
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All DBs
Position
2701103..2702329
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AA seq
408 aa
AA seq
DB search
MNYELLTTENAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQDQLETLPSRDLAYFTEGSEYFDDYLKAVAWAQ
LFASLNRDAMMENVVSALQSVTQKTVKQPQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVLYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgaccactgaaaatgccccggtaaaaatgtggaccaaaggcgta
ccggtagaagatgatgcgcgtcagcaacttattaataccgcgaagatgccgtttattttc
aaacatattgcggtaatgccggatgtacacctgggtaaaggttccaccattggtagcgtg
atcccgaccaaaggggcgattattccggcggcggtgggcgtggatatcggctgtggaatg
aacgcgctgcgtaccgcgttaacggcggcggacttgcccgaaaacctggcggagctgcgt
caggcgatagaaactgccgtaccgcacgggcgcactaccgggcgctgtaaacgtgataaa
ggtgcctgggaaaatccgcctgttaacgtcgatgcgaaatgggctgagctggaagcgggt
tatcagtggctaacgcaaaaatatccgcgtttccttaataccaataactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatctgccttgatgagtcggaccaggtg
tggattatgttgcactccggttcacgcggaatcggtaacgccatcggaacttattttatc
gatctggcgcaaaaagagatgcaggaccagcttgaaacgttgccgtcacgtgacctggcg
tatttcacggaaggttcggaatactttgatgattatctgaaagccgtggcctgggcgcag
ctttttgccagcctgaaccgcgatgcgatgatggaaaacgtggtgtcggcgttgcagagc
gttacgcagaaaacggtaaaacagccacaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttggcgaagagatctatgtgacgcgtaaaggc
gcggtgtctgcgcgtgctggtcaatatggaattattcccggttcgatgggggcgaaaagc
tttatcgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgtactaaagcgaaaaaactgttcagcgtggaagatcaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaattccgatggcgtat
aaagatatcgatgcggtgatggcagcacaaagcgatctggtggaagttctctacactctg
cgtcaggtggtgtgcgtaaaaggataa
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