Ewingella americana: GXP68_19785
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Entry
GXP68_19785 CDS
T06747
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eame
Ewingella americana
Pathway
eame03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eame00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GXP68_19785 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eame03021
]
GXP68_19785 (rpoB)
03400 DNA repair and recombination proteins [BR:
eame03400
]
GXP68_19785 (rpoB)
Enzymes [BR:
eame01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GXP68_19785 (rpoB)
Transcription machinery [BR:
eame03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GXP68_19785 (rpoB)
DNA repair and recombination proteins [BR:
eame03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GXP68_19785 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
QMV53327
LinkDB
All DBs
Position
complement(4335925..4339953)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKVTYQIRDNKLQME
LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDDIQRIEVPVEYIAGKVVAKD
YIDTNTGELIVPANMELSLDLLAKLSQSGHKTIETLFTNDLDHGAYMSETIRVDPTSDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIQVMKKLIGIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVREGVVT
DEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSRDQVDYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIQSALVAGGVEADKLGKLPRDRWLELSLTDEEKQNQLEQLAEQYDE
LKSVFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKHEEVSK
LREFIQKAYDLGDDVRQKVDLSTFSDDEVLRLAENLKKGMPIATPVFDGAKETEIKQLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgcattcgtaaggattttggtaaacgtccacaa
gttctggacattccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccggaaggccagtacggtctggaagctgcattccgttctgtattccctatcaag
agctacagcggtaactctgagctgcaatacgttagctaccgtcttggtgagcctgtattc
gacgttaaagaatgccagatccgtggtgtgacgttctccgcgccactgcgcgtgaaactg
cgtctggttatctacgagcgtgaagcaccagaaggtacggtcaaagacatcaaggaacaa
gaagtctatatgggcgaaattccgctcatgaccgaaaatggtacctttgtgattaacggt
actgagagggttatcgtatctcagctgcaccgtagtccaggcgtattcttcgacagcgat
aagggtaaaacccactcatcgggtaaagtgctttataacgcacgtatcatcccttaccgc
ggttcatggttagatttcgagttcgacccgaaagacaacctgtttgtgcgtattgaccgt
cgccgtaaactgcctgcgaccatcattctgcgtgcattaaactacaccactgaacagatc
cttgacctgttctttgacaaggtgacttaccagatccgcgacaacaagttgcagatggag
ctggtacctgagcgcctgcgtggtgaaacagcttcttttgatatcgaagctgacggcaaa
gtctatgtagaaaaaggccgccgtatcactgctcgtcatattcgtcagctcgaaaaagac
gacattcagcgcatcgaagttcctgttgaatacatcgcaggaaaagtagttgctaaagac
tacatcgacactaataccggtgagctgattgttcctgcgaacatggaattgtctctggat
ttactggctaaactgagccagtccggtcacaaaaccattgaaacgttgttcaccaatgac
ctcgaccatggcgcgtacatgtccgagaccattcgcgtcgacccaaccagcgatcgcttg
agcgcactggttgagatctaccgcatgatgcgtcctggtgagccaccaactcgcgaagct
gctgaaagcctgtttgagaacctgttcttctctgaagatcgttacgacctgtctgctgtt
ggtcgtatgaagttcaaccgttctctgctgcgtgatgaaatcgaaggttcaggcatcctg
agcaaagacgacatcattcaggtaatgaaaaaactgatcggcattcgtaacggccaaggc
gaagtggacgatatcgaccacttgggcaaccgtcgtattcgttctgtcggtgagatggct
gaaaaccaattccgcgtaggtttggttcgtgttgagcgtgctgttaaagagcgtctgtct
cttggcgacctcgacactctgatgcctcaggacatgatcaacgctaagccgatttcggct
gcggtgaaagagttcttcggctcaagccagctgtcccaatttatggaccagaacaacccg
ttgtctgagatcacgcacaaacgtcgtatttctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtctgtttatgcacag
accaacgagtatggtttcctggaaaccccttaccgccgtgtgcgtgaaggtgtggtgact
gatgaaattaactatctgtctgccattgaagaaggcaacttcgtaatcgctcaggcgaac
tccaacttggatgacgaaggccgcttcctggaagacttggtcacttgtcgtagcaaaggc
gaatcaagcctgttcagccgcgaccaagttgactacatggacgtttctacccagcagatc
gtatccgttggtgcttctctgattccattcttggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttcctactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgtagcggttgactccggtgttactgccgtagccaaacgt
ggtggtactgttcaatacgtggatgcatcccgtatcgttattcgtgttaacgaagatgag
atgtacccaggcgaagcaggtatcgacatttacaacctgactaagtacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaatctgggtgagccaatcgagcgcggc
gacgtgctggcagatggtccatctacagatctgggcgaactggcactgggtcagaacatg
cgtgtcgcgttcatgccttggaacggttacaacttcgaagactccatcttggtctccgag
cgtgtcgttcaagaagaccgcttcaccaccatccatatccaggaactggcttgtgtgtcc
cgtgacaccaaactggggcctgaagagatcacggctgacatcccgaacgtgggtgaagct
gcactctctaaactggatgaatccggtatcgtttatatcggtgctgaagtgaccggcggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgttgcgcgctatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggcgtttcaggtacggttatcgacgtgcaggtcttcacccgcgatggcgtggaa
aaagacaagcgtgcgttggaaatcgaagagatgcagctgaagcaggctaagaaagacctg
actgaagagttgcagatccttgaagctggcctgtttgcacgtatccagtcagcattggtt
gctggcggtgttgaagccgataagctgggcaaattgccacgcgatcgttggctcgaactg
tctctgaccgacgaagaaaaacaaaaccagttggaacagctggccgaacagtacgacgaa
ctgaaatccgtgtttgagaaaaaactcgaagcgaagcgtcgtaaaatcacccaaggcgat
gacctggcacctggcgtgctgaaaatcgttaaagtgtatctggccgttaaacgtcagatt
caaccgggtgacaaaatggctggtcgtcacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ttgggcgttccatctcgtatgaacattggtcagattctggaaacccacttgggtatggcc
gcgaaaggcattggtgaaaaaatcaatgcgatgctgaagaaacatgaagaagtttccaag
ctgcgcgagttcatccagaaagcgtatgacctgggcgacgatgttcgtcagaaagtggat
ctgagcaccttcagcgatgacgaagttcttcgtctggctgaaaacctgaagaaaggcatg
ccaatcgcaacgccagtcttcgacggtgcgaaagagacagagatcaagcagctgcttgaa
atgggcggaatcccaacctctggtcagatcacactgtttgacggccgtaccggcgagcag
tttgagcgtcaggttactgtcggctacatgtacatgctgaaactgaaccacctggttgac
gataagatgcacgcgcgttctaccggttcttatagccttgttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tacggtgccgcatataccctgcaagagatgctgactgttaagtccgatgacgtgaacggc
cgtacgaagatgtataaaaacatcgtcgatggcgatcaccggatggaaccaggcatgccg
gagtccttcaacgtactgttgaaagagatccgctctctgggtatcaacatcgagctggaa
gacgagtaa
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