Elizabethkingia anophelis NUHP1: BD94_3800
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Entry
BD94_3800 CDS
T03235
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eao
Elizabethkingia anophelis NUHP1
Pathway
eao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BD94_3800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eao03400
]
BD94_3800
Enzymes [BR:
eao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BD94_3800
DNA repair and recombination proteins [BR:
eao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BD94_3800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
AIL47575
UniProt:
A0A077EPV8
LinkDB
All DBs
Position
complement(4074930..4078286)
Genome browser
AA seq
1118 aa
AA seq
DB search
MQLTSIKNTLLPDLLKKQWGKEIFDTLREKQKISIKGAAGSSMSLLVAEYFVSFHQPVLV
ILDDKEDALYTTAELEELCGKEHVLYFPATFLEPYQIEKTQNANRVLRTEVINQLNSSKA
PKVIVAYAAALSEKVIKKEEFGKFSHTIKVGELLDFDFIDELLNHYKFNRTDFVSEPGEF
SVRGGIIDVFSYAYEFPFRISFFGNEVDSIRTFDIESQLTQDKVEEFQLVSAIQDISGDT
SKTSLLGILPKETVMFTRNAFLGVKHIREFYEKAQEVYKTLHQDIKYSEPKAIFVSEEEF
LNEINHFLWADFTSEVLKSSRAEIQLKLTQQPVFNKNFEWLIQDLEDKLEKGYDAWISFS
SEKQKDRLESIFEELEKNIPFKSFASELHEGFVDNENKISVYTDHQIFDRYQRYKAKNAF
AKSEQLTLKDLMSLKVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKLSYKNGDLLYVSI
HALHKISKYNGPDGKDIVLSKLGSSAWKSLKQKTKARVKQIAFDLIKLYAQRKSAKGFAY
SPDGYMQNELEASFIYEDTPDQEKATMDVKADMQADTVMDRLICGDVGFGKTEVAIRAAF
KAAVDGKQVALLVPTTILAFQHYRSFKERLKDFPVEVSYLNRFRTAKQKKETLEGLASGK
IDIVIGTHQLVGASVKFKDLGLLIIDEEHKFGVAIKDKLKTMKTNIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTKLVGFNEEILRDAISYELQRDGQVYFINNKIENLK
EIAGLIQRLVPDARVITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPMDLVSSDSRKRLEAIEQFSDLGSGF
HIAMKDLEIRGAGDLLGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERKK
LFNSVKDVNIDTDLELMLPDDYVNSTEERLLLYQKLADVRNATELNRFEYELKDRFGALP
KEAINLLKSIELKWLAADIGFDKIVMKNGIFLGYFPGNPQDKFYQSDRFKKIIQYLGSNP
QHAQLKEKHSPEGNQLMMRKDKITNVDEVNTLLNSILA
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
gtgcaattaacttctataaaaaatacgctgttacccgatttattaaagaaacaatggggt
aaagaaatattcgatacactgcgtgaaaaacaaaagattagtataaaaggtgctgcaggt
tcctctatgagtttgctagttgcagaatattttgtgtcattccatcagcctgtgctggta
attctggatgataaagaagatgctttatacacgacagcagaactggaagaactttgtggg
aaagagcatgtattgtattttccggcaacttttttggaaccatatcagatagaaaaaact
cagaatgcaaacagagtactgaggacggaggttattaatcagttgaattcgtctaaagca
ccaaaggtaattgtagcttatgcggcagcactttcagaaaaggtaatcaagaaagaagaa
tttggaaagttttcgcacaccataaaggttggagaactactggattttgattttatagat
gaattactgaaccattataagttcaacaggacagattttgtatcagagcctggtgaattt
tctgtgcgtggagggattatagatgtattttcttatgcatacgagtttccattccggatc
agttttttcgggaatgaggtagatagtatacgtacttttgatatagaaagtcagctgacg
caggataaggtagaggaatttcagctggtgtccgctattcaggatatttcaggggatacc
tctaaaacatctttattgggaattttacctaaagaaaccgtaatgtttacccggaatgcg
tttttgggagtaaagcacattcgcgagttttatgaaaaagcacaggaggtatataaaacc
ctgcatcaggatattaaatacagtgaacctaaagctatttttgtttcggaagaggaattt
ctgaatgaaataaatcattttctatgggcagactttacttcagaagtattaaaatcttca
cgagctgaaattcagctaaagcttacacagcagccagtttttaataaaaattttgagtgg
ctgattcaggatctggaggataaactggaaaaaggctatgatgcatggatttcattctca
tccgaaaagcaaaaagatcgattggaaagcatttttgaagagctggaaaagaatattcca
tttaaaagctttgcttccgaactacatgaaggttttgtagataatgaaaataaaatatcg
gtttataccgatcatcagatatttgacagatatcagaggtataaagcgaaaaacgctttt
gccaaaagtgagcaacttaccttaaaagatctgatgtctctgaaagtaggagattatatt
acccatattgatcatggtataggaaaatttatggggttggtaaaggttaataataacggg
aaagttcaggagtgttttaaattatcttataagaatggagatttattatatgtgagtatc
catgcacttcataaaatatcaaagtataatggtccagacggaaaggacattgtgttgagt
aagttaggatcttccgcatggaagtccctgaagcagaaaaccaaagcaagagttaaacag
attgcatttgacctgattaagctctatgcacaaaggaaaagtgcaaaaggttttgcttat
tcaccagacggatatatgcagaatgagctggaagcttcctttatttatgaagatactccg
gatcaggaaaaagctacaatggatgtaaaagccgatatgcaagccgatacagttatggat
cgtttgatttgtggtgatgtaggatttgggaaaacagaagtggctatacgtgcagccttt
aaagctgctgtagatggaaagcaggtagcgcttctggtgcctacaacgattttagcattt
cagcattacagaagttttaaggaaagacttaaagattttcctgtagaggtatcttacctt
aaccgtttcagaacagcaaaacagaagaaagaaacgttggaaggattagcttccggcaaa
atagatattgtaattggtacacatcagttagttggggctagtgtaaagtttaaagatttg
ggattactgattattgatgaggaacataaattcggcgtagctataaaggataaactgaag
actatgaaaaccaatattgatacattaacacttactgcaacacctattccgagaacatta
cagttctctctcatggcagcgcgggatctttcagttattaaaacaccgccgcctaaccgt
cagccagtagataccaaattggtaggtttcaacgaagaaattctgagagatgccattagt
tatgaattacaaagagacggtcaggtttattttattaataacaaaatagaaaaccttaaa
gaaatagcaggtcttattcagagactggttccggatgctcgggttattacagggcatggg
cagatggatggtaagcaattggaggcgaatatgatggattttatggaaggtaaatatgat
gttctggtttctacaacgattgtggaaagtgggctcgatgtacctaatgccaatacaatt
ttcattaatgatgctcagcgtttcggtatggcagatttgcaccagatgcgtggacgtgtg
gggcgtagtaacagaaaagcattttgttaccttattacaccaccaatggatttggtttca
tcagattcccgtaagcgtttggaagctattgagcagttttcagatttgggtagtggtttc
catattgcgatgaaggacttggaaatccgtggagcgggggatttattaggtggagatcag
agtggctttatcaatgaaatgggcttcgatacctatcagaaaattatgcaggaagctctg
gaagaacttaaggatgaagatatggaaggccttttccaaaatgaagaagagcgcaaaaag
cttttcaactctgttaaggatgtgaatattgatactgatttagaactgatgcttccggat
gattatgtaaatagtacagaagagcgattgttgttatatcaaaaactggcagatgtaagg
aatgccacagaacttaatcgttttgaatatgaacttaaagaccgtttcggagcattgcca
aaagaagcgattaacctactgaagagtatcgaactgaaatggctggcagcggatataggt
ttcgataagattgttatgaagaacggaatcttccttgggtactttccgggtaatccacaa
gataagttttatcaaagcgacagatttaaaaagattattcaatatctcggttctaatccg
caacatgcacaacttaaagaaaaacattcaccagaaggtaatcagttaatgatgcgtaaa
gataaaataacaaatgtggatgaggttaatacattgctaaatagtatattggcttaa
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