Elizabethkingia anophelis NUHP1: BD94_4068
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Entry
BD94_4068 CDS
T03235
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eao
Elizabethkingia anophelis NUHP1
Pathway
eao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BD94_4068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eao03019
]
BD94_4068
03016 Transfer RNA biogenesis [BR:
eao03016
]
BD94_4068
Enzymes [BR:
eao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BD94_4068
Messenger RNA biogenesis [BR:
eao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BD94_4068
Transfer RNA biogenesis [BR:
eao03016
]
Prokaryotic type
tRNA degradation factors
BD94_4068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
Rrp44_S1
S1CSD-TOTE-2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AIL47843
UniProt:
A0A077EN03
LinkDB
All DBs
Position
complement(4356609..4358684)
Genome browser
AA seq
691 aa
AA seq
DB search
MSKKTSKIYNYKQIAEGIEFKNPRQREQVIQSLHILLAENKIKEVEKGRYILNIEISDTL
TGVIDFNQSGNAYVKVDGVSDDIFIHQKNVKNALQGDKVTIVPFHFKGKKLEGAVVDVIE
RSRTQFVGTFQYIASKDFGFVIFDKKIINTDIFIPKTKFNGAKDGDKVIVKMLGWDDKSK
NPEGEIVDVLGHPGEHETEIHAILAEYGLPYNFPPEVEAEAQKIDKTLSEQEIAKRWDMR
DILTFTIDPKDAKDFDDALSLRKLENGNIEVGVHIADVSYYVQPGTLLDQEAYDRATSIY
LVDRVVPMLPEVLSNELCSLRPNEDKFTFSAVFELNDKAEIQKQWFGRTVINSDRRFSYE
EAQERIETKEGDLAEEINLLDSLAKILRKDRMKHGAIAFDRAEVRFNLNEESQPIGVYFK
ISKDANHLIEEFMLLANKKVSEFVSLTRKNEPTNNTFIYRIHDDPDPTKLASLRDFVHTF
GYKMNISNRNKISESMNKLLAEVKGKGEENMIETLAMRSMSKAVYSTENIGHYGLAFEYY
SHFTSPIRRYPDVMAHRLLQHYLDGGKSPNVAEYEEKCKHCSQMERLAADAERDSIKFMQ
VKFMEKHVGETFKGVISGVTDWGIYVEIPENGAEGLIRLRDLTDDSYMFDAKNYAIVGMT
HGNTYQLGDEVEIKVVKANIIAKQLDFKLIQ
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaaaacttctaaaatctataactataaacagattgctgagggcatagagttt
aaaaacccaagacaacgcgagcaggtcatacaatcattacatatcttgctggcagaaaat
aagattaaagaggtagaaaaaggtagatatattctgaatattgaaataagtgataccctt
actggtgtaatagattttaatcagtccgggaatgcttatgtaaaagtagatggtgtaagt
gacgatatcttcatacaccagaaaaatgttaagaatgccctacagggagataaggttaca
atagtaccatttcattttaaaggaaaaaaacttgaaggagcagtagtagacgttattgaa
agaagccgcacacaatttgtagggacattccaatatattgcctctaaagattttgggttt
gttatttttgataagaaaataattaataccgatatctttattcctaagactaagtttaac
ggcgcaaaagatggtgacaaagttatcgttaaaatgctgggatgggacgataagagtaaa
aatcctgaaggagaaattgttgatgtccttggacatcccggagaacatgaaacagagatt
catgctatacttgccgaatacggacttccctataattttccccctgaagtagaagctgaa
gctcaaaaaatagataaaacattatcggagcaggaaatagctaagcgctgggatatgcgt
gatatacttaccttcacaatagaccctaaagatgcaaaggattttgatgatgccctttcg
ttgcgtaagctggaaaatggtaatattgaagtaggagttcatatcgcagatgtttcttat
tatgtgcagccaggaacccttttagatcaggaagcttacgacagagctacttctatatat
cttgtagacagagtggtaccaatgcttccggaggtattgagtaatgaattgtgttccctt
cgtccaaatgaagataaattcaccttttccgcagtttttgaattaaatgataaagcagag
attcaaaaacaatggtttggaagaacggtcattaattctgaccgaagattttcttatgaa
gaagcgcaggaaagaatagaaacaaaagaaggagatcttgcagaagagatcaatcttttg
gattccttagcaaaaattcttcgtaaagatcgtatgaagcatggtgctattgcatttgac
agagctgaagtacgttttaacctgaatgaagaaagtcagccgatcggcgtttatttcaaa
atcagcaaagatgctaaccacctgattgaagaattcatgctcctggctaataaaaaggta
tcggagtttgtttctcttaccagaaagaacgagcctacaaacaatacatttatatatcgt
attcacgatgatccggaccctacaaaattagcttcattaagagattttgtacatactttc
ggatataaaatgaatatttctaaccggaataaaatttcggaatctatgaataaactcctt
gctgaagtaaaaggaaaaggagaagaaaatatgattgaaactcttgctatgcgaagtatg
agtaaggctgtttattctactgagaatattggtcattatggattagcttttgaatattat
tcgcattttacctcccctattcgtcgttatccggatgttatggcacacagacttttgcag
cattatctggatggagggaaatctccaaatgtggctgaatatgaagagaaatgcaagcac
tgtagtcagatggaacgtctggcagcagatgcagaaagagattccattaaattcatgcag
gttaaatttatggaaaaacacgtaggagaaactttcaaaggagtaatttctggcgttaca
gattggggaatctatgtagaaattcctgagaatggtgccgaaggacttataagattacgt
gatcttacagatgattcatatatgttcgatgcaaaaaattatgctattgtaggcatgacg
cacggaaatacatatcaattaggagacgaagtagagataaaggttgtaaaagcaaatatc
attgccaagcaactggattttaaactgattcaataa
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