Exiguobacterium alkaliphilum: KB235_02290
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Entry
KB235_02290 CDS
T07307
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eap
Exiguobacterium alkaliphilum
Pathway
eap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KB235_02290 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eap03021
]
KB235_02290 (rpoC)
03400 DNA repair and recombination proteins [BR:
eap03400
]
KB235_02290 (rpoC)
Enzymes [BR:
eap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KB235_02290 (rpoC)
Transcription machinery [BR:
eap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KB235_02290 (rpoC)
DNA repair and recombination proteins [BR:
eap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KB235_02290 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QUE86765
LinkDB
All DBs
Position
440616..444215
Genome browser
AA seq
1199 aa
AA seq
DB search
MVDVNRFEYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
YCGKYKRIRYKGVICDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTEPGDTPLEKKQLLSEKEFRLYREKYGSDFKADMGAEAIRTLLQ
DVQLEKEVGELREELKTVQGQRRTRAIKRLEVLDAFFTSGNNPDWMILEVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MALELFKPFVMKELVGRGIASNIKNAKRKIEKMQPEIWGVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYISLERDDAIGQGKVMSNVNEALIAYQNGYVHLHSRVAVP
ARTLNNPTFTDEQNEKLLITTVGKMIFNEILPNTFPYLNEPTMENLQEATPDKYFIDKGA
NVAEEIAARPLVEPFKKGFLGKVIAEVFQKFETTETSRMLDRMKDLGFKHSTKAGVTVGI
SDIIVLPDKQEILDEAQKQVDQIMKSFRRGLITEDERYERVVRSWNEAKDEIQSRLMKSL
NRLNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGRIIELPIKSSFREGLTVQEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGIRVAALREGTEEIESLY
DRLVGRTSFETVAHPETGEVMVEKNQLITEELAREIVDAGVERVEIRTAFTCNTSHGVCK
KCYGRNLATGSNVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEVF
EARNPKGQAVISEIPGTVIDFTESRDKRELTVEGLSETRSYTIPFGARLRVQIGDTVDAG
EVFTEGSIDPKELLTVRGVSGVQNYLLQEVQKVYRMQGVEIGDKHVEVMVRQMLRRVKVI
ESGDTPLLPGSLVDISVFKEACKDALRDGKSPATAKPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDYLLGLKENVIIGKLVPAGTGMPVYRDVELKEDKAEVALEDTTVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgttaatcgatttgaatatatgaaaatcggcttggcttcaccggagaagatc
cgttcgtggtcttacggggaagtcaaaaagccggaaacaatcaactatcgtacacttaaa
ccagagaaggacggattgttctgtgaacgaatcttcggtccgacgaaagactgggaatgt
tactgcgggaagtacaaacgaatccgttataaaggagtcatttgtgaccgctgtggcgtt
gaagtgacgaaagcgaaagtgcgtcgcgagcgtatgggccatatcgagctcgcggcaccg
gtttcgcacatctggtacttcaaaggaattccaagccggatgggccttgtgctcgacatg
tcaccacgtgcgctcgaagaagtgatttacttcgcgtcgtacgtcgtgaccgagccaggt
gacacgccgctcgagaagaagcaactcctctcggaaaaagaattccgtctctaccgcgag
aaatacggtagcgacttcaaagcagacatgggtgcggaagcgattcggacactccttcaa
gacgttcaactcgagaaggaagtcggagaactccgcgaagaattgaagacggttcaagga
cagcgtcgtacacgtgcgatcaaacgccttgaagtactcgatgcattcttcacatcaggg
aacaatccagactggatgatccttgaagtactccctgtcatcccaccagagcttcgcccg
atggtgcagctcgacggtggacgcttcgcgacatcggacttgaacgatttatatcgtcgc
gtcatcaaccgcaacaaccgtctcaagcgtttgctcgatctcggcgcgccgaacatcatc
gtgcaaaacgagaagcgtatgcttcaagaagcggttgacgctttgattgacaacggtcgt
cgtggacgtccggtcacaggtcctggtaaccgtccgctcaaatcactttcacacatgttg
aaagggaaacaaggtcgtttccgtcaaaaccttctcggtaaacgggtcgactactcagga
cgttcggttatcgtcgttggaccaaacttgaagatgtaccagtgtggtctcccgaaagag
atggcactcgaactcttcaaaccgttcgtgatgaaagaactcgtcggtcgcggcatcgcg
tcgaacatcaagaacgccaaacgcaagattgagaagatgcaacctgaaatctggggcgtc
cttgaagaagtcatccgtgagcatccggttctcttgaaccgtgccccgacacttcaccgt
ctcggaatccaggcgtttgaaccgattctcgtagaaggtcgcgcgattcgccttcacccg
ctcgtatgtacggcttacaacgccgacttcgatggtgaccaaatggcggttcacgttcca
ctttctgcagaagcgcaagcggaagctcgtcttctcatgctcgcagcacaaaacattttg
aacccgaaagatggaaaaccagtcgttacaccatcgcaggatatggtcctcggtaactac
tacatctcgcttgagcgcgacgatgccatcggtcaagggaaagtcatgtcgaacgtcaac
gaagcactcatcgcgtaccaaaacggttacgtccacttgcactcgcgtgtggcggttccg
gcgcggacactcaacaacccgacgttcacagacgaacaaaatgagaaactattgatcacg
acggtcgggaagatgatcttcaacgaaatcttgccgaacacgttcccatacttgaacgag
ccgacgatggaaaacttgcaagaagcaacacctgataagtacttcatcgacaaaggagcg
aacgttgcggaagaaatcgccgcacgtccactcgtcgaaccgttcaaaaaaggattcctt
ggaaaagtcatcgcggaagtgttccagaagtttgaaacgactgagacaagccgcatgctt
gaccggatgaaagacctcggcttcaagcactcgacaaaagcgggtgtgacggtcgggatc
tcggacatcatcgttcttccggataaacaagaaatcctcgatgaagcacagaaacaagtc
gaccaaatcatgaaatcgttccgccgtggtctcatcactgaagatgagcgctatgagcgt
gtcgtccggtcgtggaacgaagcgaaagatgagattcagtcacgcttgatgaaatccctc
aaccgcttgaacccgatcttcatgatgtctgattctggtgcccgtggtaacgcgtccaac
ttcacgcagctcgcagggatgcgtggtttgatggccgctccatctggccgcatcatcgaa
cttccgatcaaatcgtcgttccgtgagggactgacggttcaagagtacttcatctcgacg
cacggtgcgcgtaaaggtcttgccgatacagcccttaagacggctgactcaggttacttg
acgcgtcgtctcgtcgacgttgcccaagatgtcatcatccgtgaagaagattgtggaacg
gaccgcggaatccgcgtcgccgctctccgcgaaggcacggaagaaatcgaaagcttgtat
gaccgcctcgtcggccgtacatcgttcgagacagtggcacatccggaaacgggagaagtc
atggtcgagaagaaccaactcatcaccgaagagcttgcccgtgaaatcgtcgatgctggc
gttgagcgcgttgaaatccgtactgccttcacatgtaacacgtcacacggcgtatgtaag
aagtgttacggacgcaacttggcgaccggttcgaacgtcgaagtcggggaagctgtcgga
atcatcgccgcgcaatcaatcggtgagccaggaacgcaacttacgatgcgtaccttccac
acaggtggtgtagccggagatgatatcacacaaggtcttccgcgtatccaagaggtattc
gaggcccgtaacccgaaaggtcaagcggtcatctcggaaatcccgggtacggtcatcgac
ttcaccgagtcgcgcgacaagcgtgaactcacagtcgaagggctcagcgaaacacgttcg
tacacgattccgttcggagcacgtctccgtgtccaaatcggcgatacggtcgacgctggg
gaagtcttcacggaaggttcgatcgatccgaaagaattgctcaccgtccgtggtgtatcg
ggtgttcagaactatcttctccaagaagttcaaaaagtataccggatgcaaggggtagaa
atcggcgataagcacgtcgaggtcatggttcgccaaatgcttcgtcgcgtcaaagtcatc
gaatcaggtgacacgccgcttctcccaggttcactcgtcgatatcagcgtcttcaaagag
gcatgtaaagatgctctccgcgacggcaagagcccggcgacggccaaaccggtccttctc
ggaatcacgaaagcgtcgctcgagacagattcgttcctctcggccgcttcgttccaagaa
acgactcgcgtgttgacagacgctgccatcaaaggcaagcgtgactatctcctcggtctc
aaagagaacgtcatcatcggtaagctcgttcctgctggtacagggatgccggtttaccgc
gatgtcgagctcaaagaggacaaggcagaagtcgctctcgaagacacgacagtggaataa
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