Exiguobacterium alkaliphilum: KB235_06280
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Entry
KB235_06280 CDS
T07307
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eap
Exiguobacterium alkaliphilum
Pathway
eap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB235_06280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eap03019
]
KB235_06280 (rnr)
03016 Transfer RNA biogenesis [BR:
eap03016
]
KB235_06280 (rnr)
Enzymes [BR:
eap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KB235_06280 (rnr)
Messenger RNA biogenesis [BR:
eap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KB235_06280 (rnr)
Transfer RNA biogenesis [BR:
eap03016
]
Prokaryotic type
tRNA degradation factors
KB235_06280 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QUE87486
LinkDB
All DBs
Position
1201820..1204231
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AA seq
803 aa
AA seq
DB search
MNLRDQLLEIIQSSDKALTVDQLTERLALESTDAFKELIRTLNALEEEGLIGRTRTNRYG
TLAALGQVAGIISIHQRGFGFLSVEGEADDVFLPAEQLKDVYHGDTILVKKREDNRGKTE
GVLLKVLKRGLSEFVGTYTLPSGRLDQFAFIEPDDKRINFWPVVNPDKSLGAVDGHKVVV
RITKYPDGRFAGACDVVRIIGHKNDPGVDILSIVYKHGIPTEFPEDVINQANAVPDEADE
KDFIGRVDLRNETIFTIDGEDAKDLDDAVHVKKLDNGNYELGVHIADVSHYVTEGSPLDI
EAFERGTSVYLVDRVIPMLPHRLSNGICSLNPHVNRLTLSCVMEISPQNGKVVNHELFPS
VIKTTERMTYTNVREIIERDDEETLERYEPYIPLFDLMAELAEVLRKRRNSRGAINFDFA
EAKVVVDEEGKPADIVLRPSSVAEKLIEEFMLAANETVAEHFHKMDVPFIYRVHDNPKSD
KLDFFFDFVANFGVHIERFKGQTVDPKTLQKILKAIAGEPEEAVISTIMLRSMQQAKYDD
VSLGHFGLATDFYTHFTSPIRRYPDLIVHRLMRTYVFNGDVSEKTIAKYEDRLDSIAEQA
SKRERRSVDAERETQALKKAEYMESRLGEEFDGVVSGVTNFGMFIELPNTIEGLVRLQSM
DDYYHFDESQLMLLGERTNRQFRIGDAVRVKVDAVNLDERTIDFTIVGMPKREQSRRRQP
TTIKAKEGRPKKDDKRGGRGRDDKRPKRGKPGKPGQAGKPSKPGEKPKRDGEKSSQGRSA
LNLKNKDKQKRKGDAKRGAKKRR
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
ttgaatttacgtgaccaactactagaaatcatccagtcgagcgataaagcgctcactgtc
gaccaattgaccgagcgattagcgctcgagtcgacggatgcgttcaaagaactcatccga
acattaaacgccctcgaagaagaggggttaatcggccggacgcggacgaaccgttacggg
acgctcgccgcactcggccaagtcgccgggatcatctcgattcaccagcgcggctttggc
ttcttgtcggtcgaaggagaggccgatgacgtcttcttgccggccgagcaattgaaagac
gtctaccacggcgacacgatcctcgtcaaaaaacgcgaggacaaccgtggcaagaccgag
ggcgttctcctcaaagtattgaagcgcggcttgtcggagttcgtcgggacgtacacgctc
ccgagcggacgcctcgaccagttcgccttcatcgagccggacgacaagcgcatcaacttc
tggccggtcgtcaacccggacaaatcgctcggtgccgtcgatggccataaagtcgtcgtc
cgcatcacgaaatatccggacggccgtttcgccggggcgtgtgacgtcgtccgcatcatc
ggacacaagaacgacccgggcgtcgacatcttgtcgatcgtctacaagcacgggattcca
accgagttcccagaagacgtcatcaaccaggcgaacgcggtgccggacgaggccgacgag
aaagacttcatcggccgtgtcgaccttcgcaacgagacgatcttcacgatcgatggcgaa
gacgcgaaagacttggacgatgccgtccacgtcaagaagctcgacaacggcaactacgag
ctcggcgtccacatcgccgacgtctcacactacgtgacggaaggctcgccgctcgacatc
gaggcgttcgagcgcgggacgagtgtgtatctcgtcgaccgcgtcatcccgatgttgccg
caccgcctctcgaacggaatctgttcgctcaacccgcacgtcaaccggttgacgctcagc
tgtgtcatggagatctccccgcaaaacgggaaggtcgtcaaccatgagctgttcccgagt
gtcatcaagacgacggagcggatgacgtacacgaacgtccgtgagattatcgagcgcgat
gacgaagagacgctcgaacgctacgagccgtatatcccgttgttcgacctcatggccgag
ctcgcggaagtgctgcgcaagcgccgtaactcgcgcggggccatcaacttcgatttcgct
gaggcgaaagtcgtcgtcgacgaagaaggcaaaccggccgacatcgtcttacgtccaagc
tcggtcgccgagaagttgatcgaagagttcatgctcgccgccaacgagacggtcgcagag
cacttccacaagatggacgtcccgttcatctatcgtgtccacgacaatccgaagtcggac
aagctcgacttcttcttcgatttcgtcgccaactttggcgttcatatcgaacggttcaaa
ggccagacggtcgacccgaagacgcttcaaaagattttgaaggcgattgcaggggaaccg
gaagaagcggtcatcagtacgatcatgctccgctcgatgcaacaggcgaagtacgatgac
gtctcccttggccacttcggtcttgcgaccgacttctatacgcacttcacgtcaccgatt
cgtcgttacccggacttgatcgtccaccgtctcatgcgcacgtacgtcttcaacggcgac
gtgtccgagaagacgatcgccaaatacgaggaccgtctcgactcgatcgccgagcaggcg
tcgaaacgtgaacgtcgttcggtcgatgccgagcgtgagacacaagccttgaagaaagcc
gagtacatggaatcgcgtctcggggaagagttcgacggcgtcgtcagcggcgtgacgaac
ttcgggatgttcatcgagctcccgaacacgatcgaagggcttgtccgtctccagtcgatg
gatgactattaccacttcgacgagtcgcagctcatgttgctcggcgagcgtacgaaccgt
cagttccgcatcggggacgcggtccgtgtcaaagtcgacgccgtcaacctagacgagcgg
acgattgacttcacgatcgtcgggatgccgaagcgggaacagtcgcgccgtcgtcaaccg
acgacgattaaggcgaaagaaggccgcccgaagaaagacgacaaacgcggaggccgtggt
cgtgacgacaaacgtccgaaacgcggtaagccagggaaaccgggtcaagccggaaaaccg
tcgaaaccaggcgagaagccgaaacgagacggcgagaaatcgtcacaaggccgttcggcg
ctcaacttgaaaaacaaagacaagcaaaaacgtaaaggcgacgccaaacgcggagcgaag
aagcgtcgttga
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