Exiguobacterium alkaliphilum: KB235_10545
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Entry
KB235_10545 CDS
T07307
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
eap
Exiguobacterium alkaliphilum
Pathway
eap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB235_10545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eap03019
]
KB235_10545
03400 DNA repair and recombination proteins [BR:
eap03400
]
KB235_10545
Enzymes [BR:
eap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KB235_10545
Messenger RNA biogenesis [BR:
eap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KB235_10545
DNA repair and recombination proteins [BR:
eap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KB235_10545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QUE85595
LinkDB
All DBs
Position
complement(2035915..2037333)
Genome browser
AA seq
472 aa
AA seq
DB search
MYEKTLKRVFGYDAFREGQRDVIEAVADGQDVLAIMPTGAGKSLTFQLPSYIKNDGLTII
VSPLLSLIEDQMLHIRERGERGVARLTSMETLEEKQAILNHLKRYRFLYLSPEQLAVPHV
TRALARTPIQMLVIDEAHCISQWGHEFRPEYARLGELRKQLGSPQCMAVTATAPEAVKKD
IIEKLALFNPAQFVHSANRPEIRLIVERLLGEQKLPRLVELVRDVPKPAVVYTATRREAE
SLALSLDDALFYHGGMSTEDRRLVQSQFLRDEVAVMVCTSAFGMGVNKDNVRSVIHFQLP
ATLEAYMQEIGRAGRDGEAAFAVLLYADGDERIQQFLIDQQYPKEKDIRVAYFERENGTS
LSHLPRLLRMNEEDPVFGLLKQMLSERTLAGAVDWVKERKRDRYRQLGQMIDYALIKTCR
RDYLLRYFSEQPIDQEPCCDVCGPIAFPENEQVVSKNVTDWKHRLSRIFSFE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgtatgaaaaaacattgaagcgggtgttcggctatgacgcgttccgagaagggcagcgc
gacgtcatcgaagcagtcgcagacgggcaggacgtgctcgccatcatgccgacgggggcc
ggcaagtcgttgacgttccagctaccgtcctatattaagaacgacggcttgacgattatc
gtctcgccgctcttgtcattgatcgaggaccagatgcttcatatccgtgagcgtggggaa
cgtggcgtggcgcggctgacttcgatggagacgctcgaagagaagcaagcgattttgaac
cacttgaagcgataccgtttcttatatctctctccggaacagctcgccgtgccacacgtg
acgagggcgctcgcgcgcaccccgattcagatgctcgtcatcgacgaggcgcactgcatc
tcgcagtgggggcatgagttcagaccggaatacgcacgactcggcgagctccgtaaacag
ctcggcagcccacagtgcatggccgtcacggcgacggcgcctgaggctgtgaagaaggac
atcatcgagaagttggcgctgttcaatccggcccaattcgtccattcggcgaaccgtccg
gagattcggctcatcgtcgaacgtctcctcggcgaacagaagctgccgcgtttggtcgaa
ctcgtgcgcgacgtgccgaaaccggccgtcgtctacacggcgacacggcgtgaggcggaa
tcgctcgccctctcgctcgacgacgccttgttttatcatggcggcatgtcgaccgaggat
cgccggctcgtccagtcccagtttttacgggatgaggtcgctgtcatggtgtgtacgagc
gcgttcgggatgggcgtcaataaagacaacgtccgaagcgtgattcacttccagctgccg
gcgacgctcgaggcgtatatgcaagagattggtcgggccggccgcgacggggaagctgcg
ttcgcggtattgttgtacgcagacggagatgagcggattcaacagtttttgattgaccag
cagtatccgaaagaaaaagacatccgggtcgcctatttcgaacgcgagaacgggacgagt
ctatctcacttgccgcgcctgctccggatgaacgaggaagacccggtattcgggctcttg
aaacagatgctctcagaacggacgcttgccggcgcggtggattgggtaaaggagagaaaa
cgcgaccggtatcgtcaactcggtcaaatgattgactatgcgctcatcaagacgtgtcgc
cgcgattatttactccgttacttctctgagcaaccgattgaccaagagccgtgctgtgac
gtctgcggccccatcgctttcccggaaaacgagcaagttgtgtctaaaaatgtgacagat
tggaaacatcggttgagccgtatcttttcctttgaatga
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