Exiguobacterium alkaliphilum: KB235_13640
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Entry
KB235_13640 CDS
T07307
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
eap
Exiguobacterium alkaliphilum
Pathway
eap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KB235_13640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eap03019
]
KB235_13640
03009 Ribosome biogenesis [BR:
eap03009
]
KB235_13640
Enzymes [BR:
eap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KB235_13640
Messenger RNA biogenesis [BR:
eap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KB235_13640
Ribosome biogenesis [BR:
eap03009
]
Prokaryotic type
rRNA helicases
KB235_13640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
Helicase_RecD
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QUE86151
LinkDB
All DBs
Position
complement(2639818..2641365)
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AA seq
515 aa
AA seq
DB search
MNKGEYNLTKFQDLQLSEALVKGVLKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKT
AAFGIPTIERIDSKARQVQALVLAPTRELAIQVAEELNKIGEAKRVYALPVYGGQQIDRQ
IRGLKKNPQIVVATPGRLMDHMKRKTIKLDEIQTVILDEADEMLNMGFVEDIETILAGLP
AERQTLLFSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCR
LIDIDSPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDI
LVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVK
AIERVTNKKMNRRHVPTIAEVLEGNQKQAAEELIERVQAGDFKAYTQLATELLEEYEAVE
ILAAALRGLTKEPDSTPVEISYADPIRVKRQGGRNDRGGYRGNRSGGGERRGGGDRGGRS
GGGGGYRGKRSGGDDRRRSDDRRRSDDRGPRRPRD
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaggagaatataatttgacaaaatttcaagatttacagttaagtgaagcatta
gtaaaaggtgtactcaaaatgggcttcgaagaagcgacaccgatccaagctgaaacaatt
cctgtcgcactcactggagtggacgtattaggacaagcacaaacaggtacagggaaaaca
gcagctttcggtattccgacaattgagcgaatcgattcaaaggcgcgtcaagtccaagca
ctcgttcttgcaccgacacgtgaacttgcgattcaagttgcagaagaattaaacaaaatc
ggggaagcgaaacgtgtatacgcactccctgtttacggtggtcaacaaatcgaccgtcaa
atccgcggcttgaaaaagaacccacaaatcgtcgttgcgacaccaggacgtctcatggac
cacatgaaacgcaagacgatcaaactcgacgagatccaaacggtcatcttggacgaggcg
gatgaaatgctcaacatgggcttcgtagaagatatcgagacgattttggctggtcttcca
gctgagcgtcagacgcttctcttctcagcgacgatgccaccacagatcaagaagattgct
gaacgcttcatgaagtcgccgacaatcatcaaagtaaaagcgaaggaaatgacagttgag
aacatcaaccaacaattcctcgaattgcgcgaaggccagaaattcgatacgctttgccgt
ttgattgacatcgactcaccagaactcagcatcatcttcgctcgtacgaagaaacgcgtt
gacgaagtgacagaagcccttatcaagcgtggttacacggctgatggtcttcacggtgac
ttgacgcaatcaaaacgcgaccaagtcattcgtcgtttcaaaaacggcacgattgacatc
ttagtcgcaacagacgttgcagcacgtggtctcgacatctcaggtgtcacacacgtgtac
aacttcgatgtgccacaagacccggaaagctacgtgcaccggatcggacgtacaggccgt
gctggtaaaacaggtactgctcttacgttcatcacgccacgtgagttcggccaagtgaaa
gcaatcgagcgtgtgacgaacaagaagatgaaccgtcgtcacgtaccgacaatcgcggaa
gtacttgaaggcaaccaaaagcaagcagctgaagagttgatcgaacgcgttcaagcgggc
gatttcaaagcttacacgcaacttgcgacagagcttcttgaagagtatgaagcagttgaa
attcttgcggcagcccttcgtggattgacgaaagagccggattcaacaccagttgaaatc
tcatacgcagacccaattcgcgtgaagcgtcaaggtggacgcaacgaccgcggtggatac
cgtggaaaccgtagtggcggcggcgaacgtcgtggcggcggagaccgtggcggccgtagc
ggtggcggcggtggataccgtggcaaacgtagtggtggagacgaccgtcgtcgttcggac
gatcgccgtcgttcagacgaccgtggcccacgccgtccacgtgactaa
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