Candidatus Electronema aureum: LDFHOB_02410
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Entry
LDFHOB_02410 CDS
T10499
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
eaq Candidatus Electronema aureum
Pathway
eaq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eaq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LDFHOB_02410 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaq03021
]
LDFHOB_02410 (rpoB)
03400 DNA repair and recombination proteins [BR:
eaq03400
]
LDFHOB_02410 (rpoB)
Enzymes [BR:
eaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LDFHOB_02410 (rpoB)
Transcription machinery [BR:
eaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LDFHOB_02410 (rpoB)
DNA repair and recombination proteins [BR:
eaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LDFHOB_02410 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CAK8713229
LinkDB
All DBs
Position
1:516654..520739
Genome browser
AA seq
1361 aa
AA seq
DB search
MKRIRKGFAKTRKIVEPPHLIAMQRHSYDRFLQMKTVPSQREEIGLQAIFKSIFPISDFN
GLCTLEFVHYSFGEHKYTVQECIERGMTFEVPVKITVRLITFEIDETTGVKSVRDIKEQE
VFLGSLPLMTNDGVFVINGTERVIVNQLQRSPGLFYTHDGGKSHISSKRLYSARIIPVRG
SWLDFDFDIKDILYVRIDRRRKLLVTTLLKALGYSDEQLLREFYHVDQVRIENGKYFLRF
QPETFIGQRLTADLIDPTDGSVIGKEGRKISKALAKRMEKAGVQSLEVSAEDLLGRFLAA
ALRHPETGEVMADCNEALSEGLLENIKECGIKEFELLFIDNVNISESFRKTLALDKVRDT
PQALMEIYRRLRPSSPPTVEIAQDFFNKLFFDPAAYDLSEVGRYKINSRLSLDTPIEQKT
LTKEDILLSVKHLVQIKDELQESDDIDHLGNRRVRTVGELCESQYRMGLVRMERAIRERM
SLQEIETLMPHDLINPKPINSAIKEFFATSQLSQFMDQTNPLSEVTHKRRLSALGPGGLT
RERAGFEVRDVHPTHYGRICPVETPEGPNIGLIVSLATYATVNPYGFIETPYRIVHERRV
TEEIKNFTALQEQGYVVAPASVPVNDNNVIAADNLIARQDGEVVTVPTDDVTAMDVAPNQ
MVSIAASLIPFLENDDANRALMGSNMQRQAVPLLKPAAPIVGTGVERNLALDSGACLLAA
GSGVVEEADANRVVVRYDEAGTDGFETGIAVYHLSKYKKTNQNTCFNQKPLALPGQRVIK
GDVLADGPSTDLGELALGKNITIAFMPWRGYNFEDSILINERLLKEDTFTSVHIEIFETV
ARDTKLGKEEITRDIPNVGDDALRNLDESGIIRIGAEVKAGDMLVGKVTPKGETMLSPEE
KLLRAIFGEKAGDVKDSSLRVPPGIEGVIIDAKVFSRKGVDKDERSLLIEDEDIRSLNRD
MEDELRSLKNGVRKTLCDLLVDRTAKRDIKGRNGEVLLPLGKKLTAEVIAQIEFEQLRGL
DFSERAKYEGDIESVFSRYSRQAQEVRSRYEGMVARMEKGDDLPPGVVKMVKIYVATKRR
LAVGDKMAGRHGNKGVVSRLLPEEDMPFFADGTSVDVVLNPLGVPSRMNVGQVLECHLGF
AAKRLGEQIQKLAEAKELEQVKARLKVLYSDEEYNAITDGLSDEQLLDKMRKSRQGMHVS
TPVFDGATEAEIRKMLTEAGVDEMGQSTLYDGLTGDKFDNPVTVGVMYMLKLHHLVDNKI
HARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMESYGAAYTLKEFLTVKSDDVEGRTS
MYEKIVKGNNFLDAGLPESFHVLVKELKGLCLDVELLSDEE
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatacgcaaagggtttgccaaaacacgcaaaattgtagagccgccgcatctt
atcgctatgcagcggcattcttatgaccgctttctccagatgaagactgttccgtcgcaa
cgggaagaaatcggtctccaagctatatttaaaagcatttttcctatctccgatttcaac
ggactctgtactcttgagtttgttcattattcatttggcgagcataaatatacggtgcag
gagtgcatcgaacgcggcatgacctttgaagtgccggtcaagattaccgtccgcttgatc
acctttgaaatcgacgaaaccaccggagtcaagtctgttcgcgacatcaaggagcaggag
gtttttctcggttccctgcctctgatgaccaatgacggagtttttgttatcaacggcact
gagcgggtgattgttaatcagcttcagcgttctcctggcttgttttatacccatgatggc
ggcaaatcgcacatatccagcaagcgactgtactcggcccgtatcattccagtgcgtggt
tcttggttagattttgactttgatatcaaggatattctctatgttcgtattgaccgtcgc
cgcaaactgttagtcaccacgttgctcaaagcactgggctattcggatgaacaattgctg
cgcgaattttatcatgttgatcaggtgcggatagagaacggcaaatatttccttcgattt
cagccggaaacctttatcggtcagcgactaacggcagatttgattgatccgaccgatggc
agtgtgatcggcaaggaaggtcgtaaaatttctaaggccttagcaaagcgcatggaaaag
gctggcgtacaatccttagaagtttctgccgaagacctgctgggccgttttctcgctgct
gctttgaggcatcctgaaactggcgaagtgatggccgactgcaacgaggctctgagcgaa
ggcttgctggagaacattaaggaatgcggaatcaaggaatttgagctgctttttattgac
aacgtcaatatttccgaatcatttcgtaaaacgctcgccttagataaagtacgtgatacc
ccacaggctctgatggaaatttaccgccgtctgcggccatccagcccacctaccgtggaa
atcgcgcaagattttttcaataaactcttttttgatccagcagcgtatgacctttccgag
gtaggccgttacaaaatcaattcccggctgagtttagatacaccgattgagcaaaagacc
ctgacgaaggaagatatcctcctgagtgttaagcatttggtgcaaatcaaagacgagttg
caagagagcgatgacatcgatcatcttggcaaccgacgggtacgcacggtgggtgagctg
tgtgagagccagtaccggatgggtttagtacggatggagcgtgctattcgcgagcggatg
agtcttcaggaaatcgaaacactgatgccgcatgacctgatcaatcctaagccgataaat
tcagcaattaaagaattttttgccacatcccagctctctcagttcatggatcagaccaat
ccgctttctgaggtaacgcacaagcggcggctttccgccttggggcctggtggcttgact
cgtgagcgagctggttttgaggtacgagacgtacatcccacgcattacggtcgtatttgc
ccggttgagacccctgaggggccgaacatcggcttaattgtttcgctggcgacgtatgcc
acggtcaatccttatggtttcatcgaaacaccgtatcggatcgtccatgagcgcagagtt
acagaagaaataaaaaacttcaccgcattgcaagagcagggatatgtggtggctccggcc
agtgtaccggtcaatgataacaacgttatcgcggcggacaatttaatcgctcggcaagat
ggcgaagtcgtgacggtgccaacagacgatgttacggcgatggatgtcgcgccaaaccag
atggtttccattgccgcttccttaattccttttttggaaaacgacgatgctaaccgcgct
ttgatgggttctaacatgcagcggcaggctgtgccgttgctgaaaccagcagctcctatc
gtgggtaccggcgtagagcgcaatctggctttagattccggtgcttgtttgctggctgcg
ggatcaggtgtggttgaagaagcggatgcaaaccgggtcgtggtgcgctatgacgaggca
ggtactgacggttttgaaaccggcattgcggtctatcatctgtccaagtacaaaaagacc
aaccaaaatacctgctttaatcagaaaccgttagctttgccggggcagcgagtgattaag
ggcgatgtgctggctgacggtccttccaccgatttaggtgagttggccctcggcaaaaat
ataaccatcgcctttatgccgtggcgtggctacaacttcgaggattcgatcctgatcaac
gaacggttgctcaaggaagataccttcacttccgtacatatcgagatcttcgagaccgta
gcccgcgacactaagctgggcaaggaagaaatcacccgcgatatccccaatgttggcgac
gacgcgctgcgcaatcttgacgagtccggcatcattcgcatcggcgcggaagtaaaggct
ggtgacatgctggtcggcaaagtgactccaaaaggcgagacgatgctgtcgccggaggaa
aagctgctgcgggcgatatttggggaaaaagcaggcgatgttaaagattcttcgctgcgg
gtgccgccgggcattgagggtgtaatcattgatgccaaagtcttttcgcgcaagggtgtg
gacaaagacgagcgcagtttgttgatcgaagatgaagatatccgtagccttaaccgggat
atggaagatgagctgcgcagtttgaaaaatggagtgcgcaaaaccctctgtgatttactt
gttgatcgcactgctaaaagagacatcaaaggacggaacggcgaggtacttctgccttta
ggtaaaaagctaactgccgaggttattgctcagatcgaatttgagcaacttcgcggttta
gatttttcagaacgggctaagtacgaaggtgacatagagagtgtgttcagcaggtactcg
cgccaagcccaagaagtacgttcccgctatgaagggatggttgcccgaatggaaaaaggc
gacgatctgccccccggcgtggttaagatggtgaaaatttacgttgccaccaagcgcaga
ctggcggtcggcgataaaatggcggggcggcacggtaacaagggtgtagtatctcggctg
ctgccggaagaggatatgcctttttttgctgacggcaccagcgtcgatgtggtgttgaat
ccccttggtgtaccttcacgtatgaatgtcggccaagttttagaatgtcatcttggcttt
gctgccaagcgactgggcgagcaaattcagaagttggctgaggccaaagaactggaacag
gttaaagcgcggctgaaagttttgtattccgacgaggaatacaacgccattacggatggg
ttatctgacgagcagcttttagataagatgcgcaaatctcggcagggtatgcatgtatcc
actccagtctttgacggcgcaaccgaggcagaaatcaggaaaatgctcacggaggctggt
gtcgatgaaatgggccagtccaccttatatgacggactcaccggcgataagtttgacaac
ccggttacggttggagtgatgtacatgctcaagctgcaccatttggtcgataacaaaatt
catgcccgctctaccggtccttattccttggtgacgcagcagcctttaggcggcaaggct
caattcggcggtcagcggctcggcgaaatggaggtttgggcaatggagtcctacggcgcg
gcctacaccctgaaggaatttctaacggttaagtcggacgatgtcgaaggcaggacttct
atgtatgaaaaaatcgtcaaagggaacaacttccttgacgcaggcttgcctgaatccttc
catgtgttggtcaaggagttaaaggggctgtgtcttgatgttgagcttttgtccgatgag
gaataa
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