Candidatus Electronema aureum: LDFHOB_03170
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Entry
LDFHOB_03170 CDS
T10499
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
eaq Candidatus Electronema aureum
Pathway
eaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDFHOB_03170 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eaq03019
]
LDFHOB_03170 (rny)
Messenger RNA biogenesis [BR:
eaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LDFHOB_03170 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
KH_KhpA-B
HATPase_c_5
Motif
Other DBs
NCBI-ProteinID:
CAK8713950
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Position
1:complement(643894..645453)
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AA seq
519 aa
AA seq
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MNGTTALLFALTLAVGAGVGFFLRKKLIEGNQADIEKQRLLIIENAIHEAEQIKKEKLLQ
VKEEIYQSKNEAELEIKNSRKNIENEQRRLERKLDKVHEELNDLKDKETDLTSRERKLTA
KEQTVVERENEAKLLIVEQQQKLEKIAGVSCDEAKRLLIESIESEARMDAAKRLTRIENE
MKLEADRKGKNILALAIARYAGDYVADKTVSMVPLPNDEMKGRIIGREGRNIRAIEAATG
IDIIIDDTPEAVILSGFNPIRREIARQSLLQLISDGRIHPARIEEVVAKVTHDLDVEIKE
AGEKATFDVGVHGMHVDLINLIGRLKYRSSYGQNILQHSLEVAFLCGVMAAELGIDVKKA
KRAGLLHDIGKAVDHEVEGSHAVIGRDLAKKYGEREDIVYAIGAHHEDQPPQSVLDVLVQ
SADALSGARPGARKEMLQSYVKRLEDLEKIANAFAGVEKSYAVQAGRDLRIIVNSQQVGD
DAATLMSRDIAKAIEEQLTYPGQIRVTVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggacaacagcattactgtttgccctgaccttggccgtaggagctggggttggt
ttttttctccgaaagaagttaattgaaggcaatcaggcggatattgagaaacagcgtctg
ctgattattgaaaacgccattcatgaagccgagcagatcaagaaagaaaaactgctccaa
gtgaaagaagaaatctatcagtctaaaaacgaggctgaactggagattaaaaattctcga
aaaaatattgaaaacgagcagcggcgattagagcgaaaattagacaaagtccatgaggag
ctgaatgatctcaaggacaaggaaactgatctcacttcccgcgaaagaaagttgacagct
aaagagcagactgttgttgagcgggaaaacgaggcaaaattgctgattgtcgagcagcag
cagaaattggaaaagattgccggagtcagttgtgatgaggccaaaaggctgctgatagag
tcaattgaaagcgaagcccggatggatgctgctaaacgattgacaaggattgagaatgaa
atgaaactggaggctgatcgcaaggggaaaaatattcttgctttggccattgcccgttat
gccggtgattatgttgcggataaaaccgtttctatggtacctttgcctaatgatgaaatg
aaagggcgaattatcggcagagaaggacgcaacatccgagcgattgaggcagcgactggt
attgatattatcatcgacgacaccccagaagcggttattctctccggctttaacccgatt
cggcgagaaatagctcgtcagtcgctgcttcagcttatttctgatggtagaatacatccg
gcccggattgaagaagtggtggccaaagtcacgcacgatttggatgtagaaattaaagag
gccggtgaaaaagccacctttgatgtcggcgtacacgggatgcacgttgatttaatcaat
ttaatcgggcggctgaagtaccgatccagctacggccagaacattcttcagcattccttg
gaagtggcctttctctgtggagtcatggcggcagagctgggcatcgatgtgaaaaaggcc
aaacgagccgggctgttgcatgatatcggtaaagcggtggatcacgaggtggaaggctcc
catgccgttatcggtcgtgatttagcaaaaaaatacggcgagcgtgaagatattgtttac
gccatcggtgcccatcatgaggatcagccgccgcagagcgtgctggatgtgctggtgcag
tccgcagatgccctttctggtgcccgacctggcgcacgaaaagagatgctgcaaagctat
gttaaacgcttagaagatttagaaaagatcgctaacgcttttgcgggtgtggagaaatct
tacgcggtacaggccggacgcgatctgcgaattattgtcaacagtcagcaggtaggcgat
gacgcagcaaccctgatgagccgcgacattgccaaggcgattgaggagcagctgacctat
cccggccagattcgggttacggtgattcgggaaacgagggcggtggaatatgcaaaataa
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