Klebsiella aerogenes EA1509E: CCG32169
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Entry
CCG32169 CDS
T02447
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ear
Klebsiella aerogenes EA1509E
Pathway
ear03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ear00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCG32169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ear03019
]
CCG32169
03016 Transfer RNA biogenesis [BR:
ear03016
]
CCG32169
Enzymes [BR:
ear01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CCG32169
Messenger RNA biogenesis [BR:
ear03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CCG32169
Transfer RNA biogenesis [BR:
ear03016
]
Prokaryotic type
tRNA degradation factors
CCG32169
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
CCG32169
LinkDB
All DBs
Position
complement(3489428..3491869)
Genome browser
AA seq
813 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAIELNIEGEEQTEALRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGVVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIMGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVSGLKEQVPEEAKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREHYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAQEP
ALFRIHDKPSTEAITAFRTVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGEHCSMTERRADEATREVSDWLKCDFMQDQVGNTFSGVIASVTGFGFF
VRLNDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERGPRNVGKTAREKAKKGAPGKNGGGRRRQVGKQVNFEPDSAFRKEKEKAKAK
PKGEKKAKKPSAKTQKIAAATKAKRAAKKKNAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattccaggaacgcgaagctgagaagtacgcgaatccaatcccgagc
cgggaatttatcctcgaacatttaaccaaacgcgaaaaaccggccagccgtgatgagctg
gcgattgagttaaatatcgagggcgaagaacaaaccgaagcgctgcgtcgccgcctgcgt
gcgatggaacgcgatggccagttggtgttcactcgccgtcagtgctatgcgctgccggaa
cgtctcgatttagtcaaaggcgtcgttattggccaccgcgacggctacggctttttacgc
gtcgaagggcgcaaagacgacctgtatctttcatctgagcagatgaaaatgtgtatccat
ggcgatcaggtgctggcccagccgttgggtgccgatcgtaagggtcgtcgcgaagcgcgc
atcgttcgcgtgctggtgccgaaaaccagccagatcgtcggccgttatttcaccgatgcc
ggtgtaggcttcgtggtgccggatgacagccgtcttagcttcgatatcctgatcccgcct
gaagagatcatgggcgcgcgtatgggctacgtggtggtggtcgagctgacccagcgtcca
acccgccgtaccaaagcggtcggcaaaatagttgaagtgctgggcgacaatatgggcacc
ggcatggccgttgatatggcgctgcgtacccatgagatcccttacgtctggccgccggcg
gtggaaaaacaggtttccggcctcaaagagcaggtgcccgaagaagcaaaagccgggcgc
gtcgatttgcgctctctgccgctggtcactattgacggcgaagatgcccgcgacttcgat
gacgcggtgtattgcgagaaaaaacgcggtggcggctggcgactgtgggtggctatcgcc
gacgtgagctactacgtgcgccccggtacaccgctggacggcgaagcgcgcagccgcggg
acgtcagtctacttcccttcgcaggtcgtaccgatgctgccagaggtgctgtccaacggc
ctatgttcgctgaacccacaggtcgatcgcctgtgtatggtctgcgaaatgacgatctcg
tcaaaaggccggctgaccggctttaaattctatgaagcggtgatgagctctcacgcccgt
ctgacctacaccaaggtatggcatatgctgcagggcgatcaggagctacgcgagcactat
gcgccgttggtgaagcatattgaagagctgcataacctctacaaggtgctggatggcgcc
cgtgaagagcgcggcggtatctcatttgaaagtgaagaagctaaattcatcttcaacgcc
gagcgccgtatcgagcgtattgaacagactcagcgtaacgatgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatctccgcggcgcgtttcgttgagaaagcgcaggagccg
gcgctgttccgtattcacgataagccaagcaccgaagcgattaccgccttccgtaccgtg
ctggcggaactggggctggaactaccgggcggcaacaagccggagccacgcgattacgcc
gagctgttgacttccatcgccgatcgcccggatgcggaaatgctgcagacgatgctgctg
cgttccatgaagcaggcggtctacgatccggaaaaccgcggccacttcggcctggcgttg
cagtcatacgcccacttcacctcgccgatccgtcgttatcctgacctgtcgctgcatcgc
gctattaagtatttactggcgaaagagcagggacataaaggcaatagcaccgagaccggc
ggctggcactacagcatggaagagatgctgcagctgggcgagcactgctcgatgaccgag
cgccgcgccgatgaagcaacgcgtgaagtgtcagactggctgaagtgcgacttcatgcag
gatcaggtgggcaacaccttctccggcgtgatcgccagcgtcaccggctttggcttcttc
gtccgcctgaacgatctgtttatcgatggtctggtacatgtctcctcactggataatgac
tactatcgcttcgaccaggtagggcagcggctgattggcgagtccggcggccagacttac
cgcctgggcgaccgcgtggaagtgcgcgtcgaagcggtcaatatggatgagcgtaagatt
gatttcagcctgatttccagtgaacgcggcccgcgtaatgtcggcaaaaccgcacgcgaa
aaagcgaagaagggcgcgccgggtaaaaacggcggcggccgtcgtcgccaggttggcaag
caggtaaacttcgagccggatagcgccttccgcaaggaaaaagagaaagctaaagccaaa
ccgaaaggcgagaagaaagcgaaaaagccgtcggcgaaaacgcaaaaaatcgccgcggca
accaaagccaagcgcgcggcaaaaaagaagaacgccgagtga
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