Enoplosus armatus (old wife): 139287403
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Entry
139287403 CDS
T11455
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
earm Enoplosus armatus (old wife)
Pathway
earm03013
Nucleocytoplasmic transport
earm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
earm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139287403
03015 mRNA surveillance pathway
139287403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
earm03019
]
139287403
Enzymes [BR:
earm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139287403
5.6.2.5 RNA 5'-3' helicase
139287403
Messenger RNA biogenesis [BR:
earm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139287403
mRNA cycle factors
Common to processing body (P body) and stress granule
139287403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
139287403
NCBI-ProteinID:
XP_070764517
LinkDB
All DBs
Position
7:19709485..19725336
Genome browser
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEGLLNGGVDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPMWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFL
ALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSAYDRSNAAGRPSNMYFQTHDQIGMIGAGPGHMAA
MNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSGNQGASQGNGPN
SQVSQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagaccctcaccttcttggacaccgaggaa
gcggagttgctcggagcagacacccagggctccgagtacgacttcaccgacttcaccctt
cccagccagacgcaaactcaaggccagacccagagccagctggacggccaggtaaatggt
cctgatgagggtcttctcaacggtggagtggatgactccgtggccaaagccagccagctt
ttggccgagctcaactttgaggaggatgaagaagatacatactacaccaaagacctgcct
gtgcacgcatgcagctactgtggtatccacgatccagcatgtgtggtgtactgcaatacc
agcaagaaatggttctgtaatggacgtggcaacacatctggcagtcacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacgctgcataaagatggaccactgggcgagacc
gtgctggagtgttacaactgcggctgtcgcaacgtcttcctcctgggcttcatcccggcc
aaggctgattctgtggtggtgctactctgcaggcagccctgtgccagccagagtagcctg
aaggacatcaactgggacagctcgcagtggcaaccactgatccaggaccgctgctttctg
tcctggctggtgaagatcccatcagagcaggagcagcttcgggcccgtcagatcaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccagtgccaccttggaagac
ctggagaaaccaggagtggacgaggagccccagcatgtgctgctgcgctatgaggacgcc
taccagtaccaaaacatctttggccctttggtcaaactggaggctgactatgacaagaag
cttaaggagtcccagactcaagacaacataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcagatatgcggctgatgcaagga
gacgagatctgcttgcggtacaagggagacctggccccgatgtggaaaggcatcggccat
gttatcaaagttcccgacaactacggggatgaaattgccattgagttgaggagcagtgtt
ggagcacctgtggaaatccctcacaacttccaggtggactttgtgtggaagtccacatcc
tttgacaggatgcagagcgccctgaagacatttgcggtggacgagacctccgtgtctggc
tacatttaccacaaactgctgggccacgaggttgaggatgtcactatcaagtgccagctg
ccaaagcgcttcactgcccagggcctgcccgacctcaatcactcacaggtgtacgctgtg
aagacggtgctgcagaggcctctcagtctgatccagggtcctcctggcactgggaagact
gttacctctgccactattgtttatcacctgtcccgacaaggcaacggaccagttctggta
tgtgctcccagtaacattgctgtggatcagttgactgagaagattgacaagactggactg
aaggtcgtcaggctgtgtgccaagagcagggaggccatcgagtcaccagtgtccttcctg
gctcttcacaaccagatcagcaacatggacagtatgccagagcttcagaaactacagcag
ctgaaggatgagactggtgagctgtcgtcggctgatgagaaacgctacagggctttgaag
cgtactgctgagagggagctgctcatgaatgccgatgttatctgttgtacctgcgttggg
gctggtgaccctcggctggccaagatgcagtttcgctccatcctgattgacgagagcacc
caggccaccgagccagagtgtatggtgcctgtggtgctgggagccaagcagctcattctg
gtgggtgaccactgccagttgggtcctgtggtgatgtgtaaaaaggcagccaaagcaggt
ctgtcccagtccctgtttgaacgcttggtggttctggggatccggccaatccgcctgcag
gtccagtaccgcatgcacccagctctcagtgccttcccctccaacatcttctatgagggc
tccctgcagaatggcgtcactgcagctgaccgcatcaagaaaggctttgacttccagtgg
ccgcagccagacaagcccatgttcttctatgtgactcagggtcaggaggagattgccagc
tctggaacctcgtatcttaacaggacggaggctgccaacgtagagaagatcaccaccagg
ctcctgaaggctggagccaaacctgaccagatcggcatcatcaccccgtacgagggtcag
cgttcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactctatcag
caagtggaaattgcaagcgtggatgccttccagggcagagagaaggacttcatcatcctg
tcttgtgttcgtgccaatgagcaccaaggcatcggcttcctgaatgacccacgtcgtctc
aacgtggcgctgaccagagccaagtatggcgtgatcatcgtgggaaaccccaaggccctc
tccaagcagccactgtggaacaacctgctgaacaactacaaggagcagaaagtcctcgtg
gagggacccctcaacaacctcagggagagcctcatgcagttcagcaagccccgcaaactg
gtcaacaccatcaaccctgggggacgttttatgagcactgcgatgtacgatgcccgtgag
gccctcatccctggttctgcctatgaccgcagcaatgccgctggacgtccgtccaacatg
tactttcaaactcatgaccagattgggatgattggggcgggccccggtcacatggccgct
atgaatattcccataccctttaacctggtgatgccgccaatgcctccgcctagttacctg
ggtcagaccaacggccctgctgcaggtcgtggagctatgaagggtaagcctgggcgtggc
gggcggcagagggtccgtggctcgggaaaccagggtgccagtcagggtaatggaccaaac
agccaggtcagccaggatggggcctcccagtccttctcccaggggccactgacacagggc
tacatctccatgagccagccctctcagatgagccagcccggcctctcccagccggagctg
tcccaggacagctacctgggcgatgagttcaagtcccaaatcgatgtggctttgtcccag
gactcgacttaccagggtgaacgtgcataccagcatggtggtgtgactggactgtcacag
tactag
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