Enoplosus armatus (old wife): 139288843
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Entry
139288843 CDS
T11455
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
earm Enoplosus armatus (old wife)
Pathway
earm03015
mRNA surveillance pathway
earm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
earm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139288843 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
139288843 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
earm03019
]
139288843 (pabpc1l)
03041 Spliceosome [BR:
earm03041
]
139288843 (pabpc1l)
Messenger RNA biogenesis [BR:
earm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139288843 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
139288843 (pabpc1l)
Spliceosome [BR:
earm03041
]
Complex C
Other components
Complex C specific factors
139288843 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_5
RRM_10
RBD_DEAH11
RRM_3
RBD_RDR6
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
139288843
NCBI-ProteinID:
XP_070766378
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Position
8:16634254..16644572
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AA seq
626 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHVDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDEKGSKGYGFVHFETHEAANRAIDTMNGMLLNDRKVFVGHFKSRKERE
MEFGTKAMKFTNVYIKNFGEDYTDEKLKEIFAAFGRTLSVRVMKDERGRSRGFGFVNYAN
HEDAQKAVDEMNGKDINGKIIYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKN
LDDSIDDERLRKEFAPYGTITSAKVMTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRREERKAILTNKYMQRLATLRTMTSPIIDQYQQSGYYMTVPQPPTRSFYNH
NAVSNMRPVPRWTGQPPRLQGPYTTQYVGSSVPRRGSTPIATVRQASTQAPRIISSSQKT
NNIGTQTVGGRTDMPGVTRGSQYKYSSAVRNVQQVITVPAPVTRLQVVHAPMMEPPVHFQ
GQEPLTASMLAAAPLMDQKQLLGERLYPLIHALHPNLAGKITGMLLEIDNSELLHMLESP
DSLHSKVDEAIAVLQAHQVKECSPKK
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggaccagcatatcccctcgcttctttgtatgtaggggacctgcatgtt
gatgttacagaggccatgctctaccagaaattctctcctgctggacccatcatgtcaatc
cgtgtgtgccgcgacatcatcacccgcagatctctgggatatgcctacattaacttccag
caaccagctgatgcggagtgtgccctggatacgatgaactatgacgttatcaaagggcgg
cctatccggataatgtggtctcagcgtgacccaggactcaggaagtccggtgtgggaaac
atcttcatcaagaatatggatgaatctattgacaacaaggcactgtatgacaccttctca
gcctttggcaatatcttgtcctgcaaggttgtttgtgatgagaaaggatccaaaggctat
ggttttgttcactttgagactcacgaggctgcaaaccgggccattgacaccatgaatggg
atgctgctgaatgacaggaaagtttttgttggccactttaagtcccgcaaggaaagagag
atggaatttggcaccaaagctatgaagttcaccaatgtctacattaaaaactttggtgaa
gactacactgatgagaaactcaaggaaatctttgctgcatttgggaggactctcagtgtg
cgggtgatgaaggacgagaggggccgttcacgaggatttggctttgtaaactatgctaac
cacgaggatgctcagaaggcagttgatgaaatgaatggaaaggatatcaatgggaaaatc
atctatgtaggtcgggctcagaagcgtctggagcgccagggagagctcaagcgcaagttt
gaccagatcaaacaggaccgcattcagcgctatcagggggtgaatctgtatgtgaagaac
ttggacgatagcatagatgacgagagactccggaaggagtttgccccttatggcaccatc
accagtgccaaggtcatgacagacggctcccaaagcaaaggctttggctttgtctgtttc
tcttcacctgaggaggcaacaaaagcagtaactgaaatgaatgggagaattgttgcaacc
aagccactgtatgtggctctggctcagcggagggaggagcgtaaagcgatcctgaccaat
aaatacatgcagagacttgctaccttgaggaccatgaccagtccgatcattgaccagtac
cagcagtctggatactacatgactgtaccacagcctcccactcgctcgttctacaaccac
aatgctgtcagcaacatgagaccagtacctcgttggacaggacaaccacccagactacag
ggcccctacacaacccagtatgttggtagttctgttccccgacgtggatcgacccccatc
gctacagtcaggcaggcttccacccaggctccgcgcatcataagctcctcacaaaagaca
aataacattgggacccagactgtaggaggacgaactgacatgcctggtgtgaccagaggc
agccagtacaagtactcgtctgcagtgagaaatgtccagcaggtcattactgtacctgca
cccgtgacaaggctacaggttgttcatgcacctatgatggagccaccagtgcactttcaa
ggccaagagccactcaccgcctcgatgttggctgcagctccactcatggatcagaaacag
cttcttggggagcgattgtacccactcatccatgcccttcacccgaacttggctggaaaa
atcaccgggatgctgctggagatcgacaactcagagctgttgcacatgctggagtcaccc
gactccctgcactctaaggtggacgaggcgatcgctgtcctgcaggcgcaccaggtgaag
gaatgctctcctaagaagtga
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