Enoplosus armatus (old wife): 139299203
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Entry
139299203 CDS
T11455
Symbol
ddx39b
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
earm Enoplosus armatus (old wife)
Pathway
earm03013
Nucleocytoplasmic transport
earm03015
mRNA surveillance pathway
earm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
earm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139299203 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
139299203 (ddx39b)
03015 mRNA surveillance pathway
139299203 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
earm03019
]
139299203 (ddx39b)
03041 Spliceosome [BR:
earm03041
]
139299203 (ddx39b)
Enzymes [BR:
earm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139299203 (ddx39b)
Messenger RNA biogenesis [BR:
earm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139299203 (ddx39b)
Spliceosome [BR:
earm03041
]
Complex C
Other components
EJC/TREX
139299203 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139299203 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Motif
Other DBs
NCBI-GeneID:
139299203
NCBI-ProteinID:
XP_070778207
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All DBs
Position
16:complement(503671..515438)
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AA seq
238 aa
AA seq
DB search
MTENDADNKLLDYEEDEAEAVGVGDVGVVFVLTTLQQVEPITGQVSVLVMCHTRELAFQI
SKKYERFSKYMPTVKVAVFFGGLSIKRDEEVLKDCPRIVVGTPGRILALTRNKTLDXDEC
DKMLEQLDMRRDVQEIFRMTPHEKQVMMFCATLSKEIRPVXRKFMQDPMEIFVDDETKLT
LQLVARAGRFGSKGLDVTFVSDESDARTLNDIQGCFEVNISELLDEIDISSYMYYHQH
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaacgacgcagacaacaagctgctggactatgaggaggatgaggcggaggct
gtgggggtcggggatgttggggtggtgtttgttctgaccaccttgcagcaggtggagccc
atcactggacaggtgtctgtcctggttatgtgccataccagagagctggcctttcaaatc
agcaagaagtatgagagattttcaaagtacatgcccactgtcaaggtggcggtgttcttt
ggagggctatctataaagagagacgaagaggtgctgaaggactgtcctcgcattgtggtt
ggaacaccgggcaggatcctggcgctgacgcgcaacaagactctcgacnnggatgagtgt
gacaagatgctcgagcagctcgatatgcgccgagatgtccaggagattttccgtatgact
ccccatgagaagcaggtcatgatgttctgcgccaccctgagtaaagagatccgaccagtc
tgaagaaagttcatgcaagatccgatggaaatctttgtggacgacgagaccaagctgact
ctgcagcttgttgcccgggcaggcaggtttggctcaaagggcctggatgtcacatttgtg
tccgacgaaagcgacgcccgcacgctcaatgacatccagggctgcttcgaggtgaacatc
agtgagctgttggacgagatcgacatctcctcttacatgtattaccaccaacactga
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