Enterobacter asburiae L1: DI57_10210
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Entry
DI57_10210 CDS
T03084
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eau
Enterobacter asburiae L1
Pathway
eau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DI57_10210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eau03400
]
DI57_10210
Enzymes [BR:
eau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DI57_10210
DNA repair and recombination proteins [BR:
eau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DI57_10210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
MFD_D3
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHW94744
LinkDB
All DBs
Position
2152733..2156179
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQGDVKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR
QLEENAIA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagctgggt
gaactcacgggcgcggcgtgcgccacgctggtggcggaaatcgccgagcgtcatccaggc
ccggtgattctggttgccccggatatgcaaaacgccctgcgcctgcacgatgaaattcgc
cagttcaccgatagcctggtgttcagcctggccgactgggagacgctgccgtatgacagc
ttctctccgcatcaggagatcatctcctcgcgcctgtcgacgctctatcagctgccgacc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgtccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaaggccagcgcctctcccgggatgcc
ctgcgcgcgcagcttgacggtgccggctatcgccacgtcgaccaggtgatggaacacggg
gaatacgcgacccgcggcgcgctgctcgatctttatccgatgggcagcgaccagccgtat
cgtctggatttctttgatgatgaaatcgacagcctgcgcgtattcgacgccgacacgcag
cgcacgctggaggaagtagagtccatcaatttactgcccgcgcatgagttccccacggac
aaaaccgctatcgagctgttccgcagccagtggcgcgataagttcgaggtgaagcgcgac
gcggaacatatttatcagcaggtcagtaaaggcacgcttcctgccgggatcgaatactgg
cagccgctgttcttcaacgagccgctgcctgccctgttcagctacttcccggcgaatacg
ctgattgtcaacaccggggatatcgacgccagcgccagccgctttgaaagcgaaacccgc
gcccgctttgaaaaccgtggcgttgatccgatgcgtccgctgctgccgccggaagcgctg
tggctgcgcaccgacgagctcaacgccgagctgaagcgctggccgcgcatgcagctgaaa
accgattcgcttgccgataaggccgccaataccaacctggccttccggacgctgccggac
ctggccgttcaggcgcagcagaaatccccgctggataatctgcgcaagttcctggagtcc
ttcaccggcccggtggtgttctccgttgagagtgaaggccgccgcgaagcgttaggtgaa
ctgctgggacgcatcaaggtggcgccgaagcgcatcctgcgtttgagcgaagcgaccgga
aacggtcgttatctgatgattggcgccgccgagcatgggttcatcgacacgctcaacaac
ctggcgctgatttgcgaaagcgacctgctgggcgagcgcgtcgcgcgccgccgtcaggac
agccgtcggaccatcaacccggacacgctgatccgtaacctggccgagctgcacccgggc
cagccgattgttcacctggagcatggcgttgggcgctatcaggggatgaccacgctggaa
gcgggcggcatcaaaggtgaatacctgatgctgacctacgctaacgacgccaaactgtat
gtcccggtctcctccctacatctgatcagccgctacgcgggcggtgccgaagacaatgcg
ccgctgcacaagctgggcggcgatgcctgggcgcgcgcgcgccagaaggcggcggaaaaa
gtacgcgacgtggccgccgagctgctggatatctacgcccagcgcgcggctaaacagggc
ttcgcctttaagcatgataaagaacagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggatcaggcccaggccatcaacgccgtgctgagcgatatgtgtcagccgctg
gctatggaccgcttagtctgtggcgacgtcggcttcggaaaaaccgaagtggcgatgcgc
gccgccttccttgcggtggaaaacaataagcaggtggcggtgctggtgccgaccaccctg
cttgctcagcagcacttcgacaacttccgcgaccgtttcgccaactggccggtacgtatt
gagatgctctcgcgttttcgcagtactaaagagcagacccagatcctcgaacaggccagc
gaaggcaaaattgatattctgatcggcacccacaagctgctgcaaggcgacgtgaagtgg
agagatctggggctgctgatcgtcgacgaagagcaccgcttcggggtgcgtcataaagaa
cgcatcaaagcgatgcgagccgacgtcgatatcctgaccctgaccgcaacgccaatcccg
cgaaccctcaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgccg
gcgcgccgtctggcggtgaaaacctttgtccgggagtacgataatctggtggtgcgtgag
gccattctgcgtgaagtgctgcgtggggggcaggtctactacctctacaacgacgtggaa
aacatccagaaagcggcggacaggctggcggagctggtgccggaagcgcgcatcgctatc
ggtcacgggcagatgcgcgagcgcgagctggaacgggtaatgaacgacttccaccaccag
cgctttaacgtgctggtgtgcaccaccatcattgagaccgggatcgacattccgacggcg
aacaccatcatcattgagcgtgcggatcactttggcctggcacagcttcaccagctgcgc
ggccgcgtcgggcgttcgcaccatcaggcctacgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgacgcgcaaaagcgtctggaagccatcgcctcgctggaagacctgggc
gcaggctttgcgctggcgacgcacgatctcgagatccgcggtgccggcgagctgctgggt
gaagaccagagcggctccatggagaccatcggcttctcgctctatatggagctgctggaa
aacgcggttgatgccctgaaggccggacgcgagccgtcgctggaagatctcaccagccag
cagaccgaggtcgagctgcgtatgccttccctgctgccggacgattttattccggacgtg
aatacccgactgtcgttctacaagcgcatcgccagcgcgaagaaggagaacgagctggaa
gagattaaggtggagctgattgaccgctttggcctgctgcccgatccggcgagaaatttg
ctggatatcgcgagactgcgccagcaggcgcaaaagctggggatccgcaagctcgaaggc
aatgaaaaaggcggcgtgattgaattcgccgagaagaatcacgtcaacccgatgtggctg
atcggcctgctgcaaaaacagccgcagcatttccgtctggatggtccaacccgtctgaaa
tttacccaggagctgacggagcgcaaaacccgtatggactgggtgcgtaacttcatgcgt
cagctggaagagaacgcgatcgcataa
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