Exiguobacterium aurantiacum: NMQ00_00610
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Entry
NMQ00_00610 CDS
T08404
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
eaur
Exiguobacterium aurantiacum
Pathway
eaur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
eaur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NMQ00_00610 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
eaur03021
]
NMQ00_00610 (rpoC)
03400 DNA repair and recombination proteins [BR:
eaur03400
]
NMQ00_00610 (rpoC)
Enzymes [BR:
eaur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NMQ00_00610 (rpoC)
Transcription machinery [BR:
eaur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NMQ00_00610 (rpoC)
DNA repair and recombination proteins [BR:
eaur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NMQ00_00610 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UTT44416
UniProt:
A0ABY5FSK1
LinkDB
All DBs
Position
118093..121665
Genome browser
AA seq
1190 aa
AA seq
DB search
MKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECYCGKYKRIR
YKGVICDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDMSPRALEEVI
YFASYVVTEPGDTPLEKKQLLSEKEYRLYREKYGSDFKADMGAEAIRTLLQDVQLEKEVG
ELREELKTVQGQRRTRAIKRLEVLDAFFTSGNDPDWMILEVLPVIPPELRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDALIDNGRRGRPVTGPG
NRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMFQCGLPKEMALELFKPF
VMKELVGRGIASNIKNAKRKIEKMQPEIWGVLEEVIREHPVLLNRAPTLHRLGIQAFEPI
LVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNILNPKDGKPVV
TPSQDMVLGNYYISLERDDAVGQGKILSNVNEALIAYQNGYVHLHTRVALPARTLNNPTF
TDEQNEKLLITTVGKMIFNEILPNTFPYLNEPTMENLQEATPDKYFIDKGANVAEEIASR
PLIEPFKKGFLGKVIAEVFQKFETTETSRMLDRMKDLGFKHSTKAGVTVGIADIIVLPDK
QEILDEAQTQVDQIMKSFRRGLITEDERYERVVRSWNEAKDEIQSRLMKSLNRLNPIFMM
SDSGARGNASNFTQLAGMRGLMAAPSGRIIELPIKSSFREGLTVQEYFISTHGARKGLAD
TALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGIRVAALREGTEEIENLYDRLVGRTAF
ETVAHPETGEVMVEKNQLITEDLARDIVDAGIERVEIRTAFTCNTSHGVCKKCYGRNLAT
GSNVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEVFEARNPKGQA
VISEIPGTVIDFTESRDKRELTVEGLSETRTYTIPFGARLRVQIGDTVEAGEVFTEGSID
PKELLAVRGVSGVQNYLLQEVQKVYRMQGVEIGDKHVEVMVRQMLRRVKVIESGDTPLLP
GSLVDISVFKEACKDALREGKSPATAKPVLLGITKASLETDSFLSAASFQETTRVLTDAA
IKGKRDYLLGLKENVIIGKLVPAGTGMPVYRDVELKEEETKAVLEDTTVE
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcggcttggcttcacccgagaagatccgttcgtggtcttacggggaagtcaaa
aagccggaaacgatcaactatcgtacactcaaaccagagaaggacggattgttctgtgaa
cgaatcttcggtcctacgaaagactgggaatgttactgtgggaaatacaaacggatccgt
tataaaggagtcatttgtgaccgctgtggcgttgaagtgacgaaagcgaaagtgcgtcgc
gagcgtatgggccatatcgagctcgcggcaccagtttcgcacatctggtacttcaaaggg
attccaagccgaatggggcttgttctcgatatgtcaccacgtgcactcgaagaagtaatc
tacttcgcgtcgtacgtcgtgacggagccaggtgacactccgcttgagaagaaacaactt
ctctcggaaaaagaataccgtctctaccgtgaaaaatacggtagtgacttcaaagcagac
atgggtgcggaagcaatccggacactccttcaagacgtacaactcgagaaggaagtcgga
gaactccgcgaagaattgaagacggttcaaggtcagcgtcgcacacgtgcgatcaaacgc
cttgaagtgctcgatgcattcttcacgtcggggaatgatccagattggatgatcctcgaa
gtacttcctgtcatcccgccagagcttcgcccgatggtgcagctcgacgggggacgcttt
gcgacttctgacttgaacgatttgtatcgtcgagtcatcaaccgtaacaaccgtctcaaa
cgtttgctcgacctcggcgcgccgaacatcatcgtgcaaaacgagaagcgtatgcttcaa
gaagcggttgacgccctcatcgacaacggtcgtcgtggtcgtccggtcacaggaccaggt
aaccgtccgcttaaatcactttcacacatgttgaaagggaaacaaggtcgtttccgtcaa
aaccttcttggtaaacgggtcgactactcaggacgttcggttatcgtcgttggtccaaac
ttgaagatgttccaatgtggtctcccgaaagagatggcccttgaactcttcaaaccgttc
gtgatgaaagaacttgtcggtcgcggcatcgcgtcgaacatcaagaacgccaaacgtaag
attgagaagatgcaaccagaaatctggggcgtcctcgaagaagtcattcgtgagcatccg
gttctcttgaaccgtgccccaacgcttcaccgcctagggattcaagctttcgaaccgatt
ctcgtcgaaggtcgcgcgattcgccttcacccgctcgtatgtacggcttataacgccgac
tttgatggtgaccaaatggcggttcacgtaccactttctgctgaagcacaagcggaagct
cgtcttctcatgctcgcagcgcaaaacatcttgaacccgaaagacggtaaaccagttgtt
acaccatcgcaggatatggtcctcggtaactactacatctcgcttgaacgcgacgatgcc
gtcggacaagggaaaattttgtcgaacgtgaacgaagcgctcatcgcgtatcaaaatggc
tatgtccacttgcatacacgtgtcgctcttccagcacgtacgctcaacaacccgacgttc
acagatgagcaaaacgagaaattgttgatcacaacggtcggtaaaatgatctttaacgag
atcttgccgaacacgttcccatacttgaacgagccgacgatggaaaacttacaggaagca
acgcctgacaagtacttcatcgacaaaggtgccaacgtggcggaagaaatcgcctcacgt
ccactcatcgagccgttcaaaaaaggattccttggaaaagtcatcgcggaagtgttccag
aagtttgaaacgactgaaacaagccgcatgcttgaccggatgaaagatctcggcttcaaa
cactcgacgaaagccggtgtgacggtcggaatcgcagatatcatcgttcttccggacaaa
caagaaatccttgatgaagcgcaaactcaagtcgatcaaatcatgaagtcattccgtcgc
ggtctcatcactgaagatgagcgttacgagcgcgttgtacgctcttggaacgaagcgaag
gatgagattcaatcacgattgatgaaatccctcaatcgcttgaacccaatcttcatgatg
tctgactcaggtgcccgtggtaacgcgtccaacttcacgcagctcgcagggatgcgtggt
ttgatggccgctccatctggccgcatcatcgaacttccgatcaaatcttcattccgtgaa
ggtctgacggtacaagaatacttcatctcgacacacggtgcgcgtaaaggtctcgccgat
acagcccttaagacggctgactcaggttacttgacacgtcgtctcgttgacgtagcccaa
gatgtcatcatccgtgaagaagactgtggaacggaccgcggaatccgcgtcgccgccctc
cgcgaaggcacggaagaaatcgaaaacttgtatgaccgcctcgtcggccgtacagctttc
gagacagtggcacatccggaaacgggtgaagtcatggtcgagaagaaccaattgatcacc
gaagatctcgctcgcgacatcgtcgatgctggaatcgaacgagttgaaatccggacagcc
tttacatgtaacacgtcacacggcgtatgtaagaaatgttacggccgcaacttggcgact
ggctcgaacgttgaagtcggcgaagctgtcggtatcatcgccgcccaatcgatcggtgag
ccaggaacgcagcttacaatgcgtaccttccacacaggtggggtagccggagatgatatc
acgcaaggtcttccgcgtatccaagaggtattcgaggctcgtaacccgaaagggcaagcg
gtcatctcggaaatccctggtacggtcatcgactttacagaatcgcgtgacaaacgtgaa
ctcacagtcgaaggactcagtgagacacgcacgtacacgatcccgttcggagcacgtctt
cgtgttcaaatcggagatacggtagaagccggagaagtcttcacggaaggttcgatcgat
ccgaaagaattgctcgccgtccgtggtgtatctggtgttcaaaactatcttctccaagaa
gtacaaaaagtttaccggatgcaaggggtagagatcggcgacaaacacgtcgaagttatg
gttcgccaaatgcttcgccgcgttaaagtcatcgagtctggtgacacgccgctcctccct
ggttcgctcgtcgacatcagcgtcttcaaggaagcatgtaaagatgcgctccgtgaaggc
aagagcccggcaacagcgaaaccggtccttctcggaatcacgaaagcgtcgcttgagaca
gattcgttcctctcggctgcttcgttccaagaaacaactcgtgtattgacagatgctgcc
atcaaaggcaagcgcgactatctcctcggactcaaagagaacgtcatcatcgggaaactc
gttccagctggtactgggatgccggtttaccgtgatgtcgagctcaaagaagaagagacg
aaagccgtcctcgaagacacgacagtcgaataa
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